GgaINT0089882 @ galGal3
Intron Retention
Gene
ENSGALG00000013795 | HIVEP2
Description
NA
Coordinates
chr3:54683442-54691898:+
Coord C1 exon
chr3:54683442-54684379
Coord A exon
chr3:54684380-54691100
Coord C2 exon
chr3:54691101-54691898
Length
6721 bp
Sequences
Splice sites
5' ss Seq
CTCTTGTCA
5' ss Score
-21.45
3' ss Seq
AGAGGAAGGGGTTGTCTCAGGGG
3' ss Score
-4.76
Exon sequences
Seq C1 exon
AAAACATGGAGGACATGCAGCAGGAGGCAGAGAAGAGTAGCAACCTGGCAGGCCTGTCAGCAGAGCATCAGTTTTCTGATGCAGAGGAGTCAGATGGTGAGGATGGTGATGACAATGATGAAGATGATGAAGATGAGGATGACTTTGATGATACTCAGGGAGACTCAACACCAAAAACCAGATCAAGAAGCACTAGCCCTCAGCCTCCTCAGTTCTCCTCCCTGTCGGTGAACTCAGCTGGGGCATCGCAGGGGGCTTCCCCCGAGGGCTCCCTTTCTGTGGGACACTCCTCCCTCATCAGTTACTTGGTCACTTTACCTAGCATTCAGGTTACTCAGCTTGTAACATCAAGCGACTCCTGTGAAGACTCACAGATGACAGAATATCAGAGGTTTTTCCAGAGTAAGAGCACCGATTCAGAGCCCGACAAAGACAGGTTAGACATACCTAGCTGCATGGATGAGGACTGCGTGCTTTCCTTAGACCCCAATTCGTCTCCAAGGGACCTCTCACCTTCCAGTCAGCAGTCGTCCCCTGGCTATGATTCTTCACCATATAGAGATAACTCACCAAAGAGGTATTTAATGCCAAAAGGAGATTTGTCACCCAGAAGGCATTTGTCACCCCGGAGAGATATTTCACCCATGAGGCACCTTTCTCCACGGAAGGAGGCTGTGCTGAGGAGAGAATTATCACCAAGACGGGACGTTTCACCAAGACGTCACCTATCACCAAGGAGACCAATGTCACCAGGGAAAGATGCGTCTGTTAGAAGAGATTTGTCTCCTAGGCGAGAGAGGAGATACATGGCCTCGGTTAGAGCAACATCTCCCAGGAGGGGCTTATACCATAATCCAGCGTTGTCTATGGGTCAATATTTGCAGTCTGAATCTATTCCAGTGGGGCATTCAGTAAGTATGAAAGAGTATTTATTCCTC
Seq A exon
TTGTCAAAAACAGTGTTCTTGCTTAAGCTGTGCATAATATTTTGAAGAACTTTGCCATTTTGTAGAAAAACAAAGCTTTGAACTTGAGTGGGAAGTCCTGGAGTGAATGCAAGACATTTACAATAGACAGGGACCGAGTCAGAGGGTCGGATCTTCACTTGGTCCACATCAGAGTAGCTCCATTAACTTCAATGAAATTAGGCTGGCTTACATTAACCTCCCCATCTTTATCTTTAAATGGCCCAGGAACCTTACACGGTGTGTGTGGCTTGTTACTACACTGTAAAACCTTTTACGTCCCAGACTGTCAGATGGAATCAAGCTCAGATCAGGGCTCAAGACCTTGATACTTCAGTATGTTGCCCATCCTTGATGTATCGCTTAATGCTATAAAAACACTACTTTTGTAATGGAAATCCTTGGAAAAGCATGGTGCCCATCTAAAACAGGATCTGTGGCTGGAGTATAAATAATATTATTGTGTGACAGGAGCAGACCATAATACCCAGCAGAAAGCACCATCACAACTGTCTCTTTTGGCAGGGACACCACTATCTAGGTGGAAAAGGAAACTTGCACAGCTGCTGTTTGTGCTGTTCTGTATCAGTAAATAAGCTCCCAGAAACTGCTGACTTGGCACTTTTGACACACCCTAGCATTTGCAAAGCTCCCTCCGCAAATAAAGTTGGTCTTTAGAGTTAGGGAATGGCCTTACTGTGTGCGCTTTTTTTTATTCATGTCATATGATTCCTTCATCGTGTTTGCTGCTGCCACTATCCTCTCACTGTGTGCCTTTCTGAGCAGTGTGTAGGTTCAGCTTGGGTGAGCTGTGACAGGCTGCCTCCACGTCAGGCAGGACTGTCCTGCCCTCCTCTCCATCACCAATCTTCTTTGCTGTTTGTGTAGTCATGGTTCTTCTCTGTAGGGAAGAACAACTGAACCCCGAGCTTATAAAATTAGTATCTCCAGAGCGGTAGTGCAAATTTCTCTGCTGAGCCAAGCAGAGGAGGGTGGGCTTGGTTGGGTTTGTTGTTGCAGCTGGGCAGAGGTGGCTGGAGCCACAAACAGTGCTGAGAAGCACTAGCCAGACAGATCCAAAAGTCCTCCTGGCTTTTCAGGAGAATTAGGGAAAACTGTAATATTGAATGAATCTGCACATAAGTGAAAGTAATAGAAGTCCCAGCAACCCATTGTAGAGCCTCCCCTGCCCTTGGCCAGAGCCTGCTCCACCTCCCTGTCACCAACTGCTTGCCCCAGCCGCATCTTCCTGACCTCTCACCTGGTCTCACTCCCTCATCTTAGATGTGATGCCATGGTTTGCTGAGTTGTTGGGGAGAGCAGCAGAGGGGGAGGGCTTCCTAAGCTGTCCTTAGAGAAGGGAAGGGTATGTTGAAACCCTGCTGCAGTTTCACAGACACGGTCTCTGCAGAGATGAGAGACAACACAAAGCCAGCCACCAGCCTCACCAACAAAGCAAGGAAGCACACAAGAAAAGATAAATAACCATCAGTTTAAGAGCAGTAATTCTGTGGTATCAAATTCAAGGAATTATGTGGGACGCTACAGCTGACGTTGTACAGAGAGTCCAAGTTCTAATGTCCTCCATGAGATATTTCCATTGGCATCCTGTAGTAGAGATCTTGGATGTGTGGGGATGCTGGCAAAAGGGTATGGAACAGTCATTCTTTGGCAGTGTGACAGTTCTTACTGTAATATTTGCCTTGTGTGTTATACACACCTTCCAGCAAGGCGTTTAGCACATCGTAAGGACTCTTTTAGCACCCTTAGCTCCTTCCTTTGGAAATTGCTCTTCACCATACCAGATGGGCTCTTTACACTTACCTTATTTTTGAGGTAGGATCAGGCTTTTGTCTTACAAGAAAGCACTGGTAAATTAATGGCATGTTGATGTTTAGAGATATACCCAAATCTAAGTATAATCACTGGACCCTGAACATAGGTGTCACTGGAAGCAAAGCCTGGTCAAATTTAAATGAGGAAATCAGAGATGGAGATGATCATCCATCTCACAAACACTGTGAGGAAGGAAAGATGGATTCTTTATCTCTGTATGTCTTTCTGGGAGATATACTTTAACCAAACAGAAGATGAGTTGAAGTGAAATGCATGTTAATGCACTCAGTGTGTGGGAAGACAGATAACACCTGAGCTTGCAAACTGTTAGAAAAGAAAAAGGAATAAAGACTATTTTTCACTTTCAGAGAACTGAAATCCAGCAAATAAGGACGTGATGCAGATGCCAACTTACAGTGCTGCTTCCTGTTTCAGAGCTGCATTGAATTCCCGATCCTTGCAGAAATTAGAGTATTTTTGTACTTCTTACCAGAAGTTACCAGAAAACAACAACAACAACAACAAAAACTTTTATTTCTTCTTCACTGCAATTAATTTACATATTTGCTCTAGACTCTTTGGCTAGTGGTGATCTGGTTCCCCTTCATGTTTCTTCCCCTTGAATGTTTATGCTCTTTGGTGGTCCTGTGCAGAGAGCTAGTGAAGTGCTCTGGTATTGGAAGTACCGTGTTAAAAGCAATTGAAATTATTTCTTTAGGAAGTGGAAAAGAGCATGGGAAAAGATATAATAATATAGAATTGGTTTTGGTTTTTTATTCTGGCAGTTAATAACAAGATGCGCACTTGCAATAGTATACTGTCTCCGAAGTAGGCTAAAGCTAGCGCACCTTTGGCTTTGGCAAGTTAAATTGTTGTCTTTAAATTGAAAGGCAAATCACCACTGCTCTCTATGGATCTCTCTCAGGATCTTCTGTCAGTGCCAGAGGTTTTTTTATTTCTCAGCAGTCTGGCACTGTTATCAAAAAGGCTCTGATTCTTCTCTATAGTTATTTTACCCTAGACCTGGGAGGAGGAGGAGAGATGGGTTCGTTGTTTTTATTCAGCTCAAGTGCATCTCTCTTACCCCTTTTATAGTTTGGATCAGGAGTGTGCTTTGGAGATGAATGTCTCTATTGTCATATTTATTCTGCTTTGACTTGCATTGCAGAGCATTCTTGGAATAAGTGAGCTGAATTATTTTCAGGTGACATTAAACTGGAGAATATGCTCAAGGAGTGCATCAGGTGTACTTAAACTGTGAGTGGGCATTCAAGTGAATAAGAGACTACAGGATTAGTCCAGAGTAACCGTCCCCTTCAACCTGACAATACATATACTGTGAACATCAGGTTCATCATCAGTGGTTGCATTCTACTCCTGCTTTTCCTCACTTCTAGTACACCCCTTTACTTCCTCATAGAGACGAGAATTTTTGCCTCTTCTTTAAGTCATGAAGCTGAATTTACCTTGTTAGCAGAACATACCTGTCCTTAGCAACTATTTTAGCTTCTAGGAGTTAGTGCATTTTTCCCCCGTTGCCAGTTTTCACAAGCAGTTTCTGAAAATAAGGACTTACTGCAGTGTGCTTTATTGATATGAGTTTACCTGCTTAAGTTGCTGTTTTGTTTCACCTTTCCTTCATTTTGATGTCTGAAGCCTGTCGTGATATATTCAGAAGGGCCGAAGGGAATTAGGCATCACCACTTGAAAATCATTAGGACCTAAGGTCCTTTGATCATCCCAGACATATGGATATTAAATCCCTTCCTGAACTCTGAATACTTTATCATCTTGAGTGAAATGCATTCCTGTACAGAAAGCTAGCATAAAATTCCTAAAGGTGAACTGTAAATAGGTCCATGTATGCGTATGTTGTCTGCAATAGTGCATTCTCAGTAGGACTGCAAATTGACTTGATCCTGAAACTAAAGTACACATAGATGTATAGTAAGTGTATTAAGTATCTATCTTTTAGAAGGCACATGGTAATGATGTCCTCTGTTACTGAATTTCCCCATTGAGTTCATTATTTTCTGGTTTTTAACTTTAAAAAGTTACAAGTACTTTAAAATAAGGTAATCACAGTGATTTTTTTTCACCGACCATCTTTTTGCAAGCTGTGGTCTGAGGGAATCTGGGGCTGCCAGGCTTTGAAATGTGATCTTCCTCTTAATTCCCTATAGTCTGTTTTGGATAATGTACCAGATACAGAGTAAACCCTGGCTTGTCCATTAAGGCATTCTGGGAGATGTGTGAAGTTGGCTATGGCTTTGCACAGGGATGTGTTGTGGAAGTCTAGCTTTATGACCAGGCTAGAAAGTTTAGTGAAAAACTCCTAAAACTATTGTTTGGAAAATTAGGTATCACTTGGAGTTGGAGGGAAATATGCTTATCTGATACAAATGAGAACTGATAAAAAATGAAATGGGTCCCCTTTGCCTGACAAAGAGAGGAACTCATCTCACTGAAGTTATAGGAATCCATTCTGAGTATATAGCAAAAACATACTGTGACTTTCTGCTCTGTAGTCAATGTTGGAATCTAATATTATAAACAGAATAAAGTCTTTGGATTTTCAGGATATTTGCTAAAAGGAGAGATATCCTCTAATATTCAGTCTCTTCCCCATGAATGTGCATGTGTGCATCTGTAAGTATGAACATGCTAGATATCTGTAAAGGATATAATAATAGGATGAAAGGTACAACCACTTCAAAACTCATCTGCCAGAGTTAGAGAAAGATATTCCTGTGTGTGCTCAGCCAAGCTTGGAAGGCATCCAGTGGACATGCACACACTGTCACTGTCTATGTAAAAGTTAAGCATGAGAGACATATACTGGATGATAGCGCTGATCTTGGGGGCGTGTAGCAGTTTCTATCATGTTAGCCACTTCTATTTGACAAGGACAGACTGACATCCTACTTCCTTTCGAAACCATGGCAGGGTACAATGCGAAGCCAGTGTCCTTCTCAATTAGAGATTTGAGTGTGGCTAGGTTTGTTCTTCTATGAGTTTCACTCCTTTTCATTTGGTTGCTTTTGCTCTATTTCCCTTGGCCCAGATTCACATTAGATGCATTAATGATAAATGTCACGGTTTAGAAAACAGCCAAGAGGACAACATGACTGAGAAATGGGCTGACAGAGGAAAGATGGGAAAAAAAAAGGGGGCAAGCAACTGTGCAGTGGTGAGGTTAGCGATAGGAAGGACTGACAGAGTAGGTGAACTATGTCTTGTGGCTTGGCAACTCGTTTATTCTGTAAATTTTTCCCCATTCAGCAGTACAACGTGCTGTCACTGTGCTTTCTTATGATAGTTTCTCTTTTATGAGACCTGAGTGTCTCACTTTCTGAATAGAAAAAATCCCAGAATTAGATTATTCTCAGAATAACATCATTTAAGTTCAAGTCTGATGATTATGGGTCACCCTTCCTGTCTCAGCGTTGATTTATATTAAACAGGACAAAGCATCTGAGCACAGTGAGACTCAGCCGCTGGGTAGCACAGAAACTGAATCTTTAATTGCTTCCTAAACCCATTCCCCAGGATAGGATCAAGAGGTTGCTTAATGCCCTGAGAACTAGGGTTTTCCCAGCAGTGAAGAGCTGCCACTGCAGTGCGTTGGCATGTAGCAGCACAGTCCCCAGCTGCTGCACTGGGACTGGGGGTGGTGGCACAGCTCTGGGGCAACCGGTAGGTGTTTGATCAATCTGCTGAGCGGAGATGGGTATTTTTATTCATTTAATTTCCTATGGGTGTCCCTGGGTTGTGTGGCCACATCCCACGTACAATTATGAAAATGTCATCCTGCACTTGTGTCATCGCTGTTTCTCTGTTCGGCAATAAATGCTACTTAATCATCAAGTGGAAAATAAATTTTAAAAGTTAAGAATGAAAAAAGAGATACCCACAATGTGCCCAAGATGTGTTTAATACTGAGTGAAGATGGAGCTATTCATTCTATCAAGAAAGAAACTGATGGGAAAACACTGAAAAATTCAGTACAGTGAGATTGTTTTTTACTAGCCATTACAAAATCCCTCCTTCTTCTCAGTCCCATTAAGAGTGAGTGTCTCCAGAACAGAATCATCACTTTCACTCACAGTTAACACCTGTGCTTTTCTTATTATTTATTGTTTACACTACAGATAGGCCAAAACGATGCTCCACTGTGTTAATGACTGTAAGAACTTGAGTCTTCTTTGCACAGAGGTGTTTGAACTTGCCTGGAAACACTCATCCTCTTTAGTCAGTGAGGTGGGTGGGAAGTAAGGGGAGGAAGTGCCTTCTCTGGGGCTTCAGAGCAGGACCTTTCAGCAGACAGAATGTTTATACATGCAGTCAGGATTTTCCCATACTGGTGGCAGACAGGGAGCATTCCAGTGTGCGTTTCTCTGCAGCAAAGCCCCGATACCCTGTGCAGGCTGCCAACACCAGTGCAATTTGCACAACTTGCCAAAACAGAGGGTAAGACGGATGTCCTGGCCAAATGTGTCGTGGGGAATGAAATTCTATCTACCCCAAATTCTCTCTGCAGTTTCGGTTGAATATAATACTCTTCACTTCCTGACCTAAATTGCTGCATTGTGTTGCTGAACGCTTAACTAGCTGCTGCATTTCACCTCAGAGGCAAGAGCCCTGTAGGGCTGAGCTAAGCAAAACCTCCTATGTTGTTTGAATAAGTAATTAGTGTAGTTCTCCAAACGCTTTGGTATCCATCTGGATGAAAGGTGCTGCGTGAACAGGAGGCCACGTTGCAGAGGAAAGCAGATAGGTGGTTTGGCAGCTTGACAAGAGTTTTGCTAGCGGTGGCGCTGATGTTTCTTTCGTTGTTTCTTTGTTGCAGAGGAAGGGGTTGTCTCAG
Seq C2 exon
GGGCCTTACTTCGGCTTGTATGGAGAAAAAGGAGCTATGGAGCACCACAGGCCTAGCCTGTTCCCTGAAGGTCCGAGCGACTATGTCTTCAGCCACCTTCCACTACACTCCCAGCAGCAGATCCGAGCACCCATCCCCATGATGCCAATCGGGGGCATCCAGATGGTCCACTCAGTACCTGCAGCCCTTTCAGGTTTACATCCTCCGTCCACTCTGGCCCTGCAGAGGGAGGGCTCTGAGGAGAAGCAAAGAGGACTGACAGAAACCCTCACTCAAGAGTCACGTGGTGTTCCCAAGCACCACGAGAAGCGTACCTCTCCGCACAGCTTGCACCCCACCGCTCCCTCCAGCACGTCCTCCTCCCCGTTGCTGTTGCTGACACAGAGCACTTCCGAGGACAGTATAATAGCGACGGAGAGGGAGCAGGAGGAGAACATACAGACTTGTACGAAAGCCATAGCCTCCCTGCGAATCGCCACAGAAGAAGCTGCTCTGCATGGGGCGGAGCAGCCTCAGAGGCCTTCTGAGCCTCACCAGAAACCCTCAGAAAGTGCACATTTTAGCATTAAACACTTTAGTGGATCTGAGCCGGGCCAGGCCTGTGCCTCAGCCACCCATCCTGACTTGCACGGTGGTGAACAGGACAGTTTTGGTACATCACAGACTGCGCTAGCCCATCCCACCTTTTACAACAAGAGCTTTGTGGACATTCGACAGCTGGGCTTTCACAGCAGGAGCGAGCCCCCATCAAGCACACAGGAAAGAAAAGATCTGTCGTCTGAGAAGAGCAAGCCACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013795:ENSGALT00000022399:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.895 A=NA C2=0.789
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]