HsaINT0076329 @ hg19
Intron Retention
Gene
ENSG00000010818 | HIVEP2
Description
human immunodeficiency virus type I enhancer binding protein 2 [Source:HGNC Symbol;Acc:4921]
Coordinates
chr6:143072604-143081804:-
Coord C1 exon
chr6:143080909-143081804
Coord A exon
chr6:143075069-143080908
Coord C2 exon
chr6:143072604-143075068
Length
5840 bp
Sequences
Splice sites
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
3' ss Seq
CTCTTTGTTTCTCTGCGCAGAAT
3' ss Score
11
Exon sequences
Seq C1 exon
AAAATTTGGAAGATTTGCACAAAGCAGCAGAGAAGCATAGCATGTCCAGCATTTCAACTGATCATCAGTTCTCCGATGCTGAGGAATCAGATGGTGAGGATGGAGATGATAATGATGATGATGATGAAGATGAAGATGACTTTGACGACCAGGGAGATTTAACACCAAAAACAAGATCAAGAAGCACCAGTCCTCAGCCTCCTAGATTCTCCTCCTTGCCTGTGAATGTTGGCGCCGTACCCCACGGGGTTCCTTCAGATAGTTCCCTGGGACATTCTTCGTTGATCAGCTATTTGGTTACTTTGCCAAGTATTCGAGTTACTCAGCTTATGACACCCAGTGATTCATGTGAAGATACCCAGATGACAGAATACCAGAGGCTATTCCAGAGCAAAAGTACGGACTCAGAACCAGACAAAGACAGATTGGACATACCTAGTTGTATGGATGAGGAGTGCATGCTACCTTCAGAGCCAAGCTCCTCTCCCAGGGACTTCTCACCCTCAAGCCACCATTCCTCTCCAGGATATGATTCTTCACCCTGTCGAGATAATTCACCAAAGAGGTATCTGATACCCAAAGGAGATTTATCTCCCAGGAGACATTTATCACCTAGGAGAGATCTGTCACCCATGAGACATCTTTCACCAAGAAAGGAAGCTGCATTGAGAAGAGAGATGTCCCAAAGAGATGTTTCACCAAGAAGGCATTTGTCTCCAAGGAGGCCAGTGTCTCCTGGGAAAGATATCACAGCAAGAAGAGACCTCTCTCCTAGAAGAGAGAGAAGATACATGACCACAATAAGAGCGCCATCTCCCAGAAGGGCTTTATACCATAACCCACCATTGTCCATGGGACAGTATTTGCAAGCAGAGCCAATTGTATTGGGGCCTCCT
Seq A exon
GTAAGTATAATCCACTTTTCTTTCTAATACATAAGTGGAAGCACATTGGTCCTCCTGATAATGCACTGGTGTGAAGTTTAGTAGAACATGGGTATCTGTCATGGGTGGAGTGAATCTGGCTAATGAAAATAGCGGGGAGACATTTTTGTCATATGCTATTGTCAGTAACATGGCTGTGGCATTACCTAAAGTGTAGTATTGCATCAGAGCAGCAGTGCATTCCCAGTGGGAACAGGTGAGGCCTTTCTGAAGGCTTTCTAAACTTAACTAATGATAGACGTAAGCTGAAGCCTTTTTGTAAGTAAAAAAGATGAACCTTTAGAATGCCATGACTGCATGGACATACACTCACAGGGACATTTAGGCATCACTTATATAACTCATCACCAGGTAAGGATTCTGATTCAGCTGTTAACCTTGACTTTCCAAAACTTTTATTTTTAAAATTTTTATTTTATTTATTTTTTTTGAGACAGGGTCTCACTCTTTCACCCAGGCTGGAGTGCAGTGGCACGACTTTGGCTCACTACAACCTCCGCCTCCCAGGTTGAAGCGATTCTCCCATCTCAGCCTCCCGAGAAGCTGGGACTACAGGCGTGTATCACCACACCTGGCTAATTTTTGTATTTATTGGTAGAGGCAGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGAACTCAAGTGATCTGCCTGCCTCGGCCTCCCAAAGTGCTAGGATTACAGACATGAGCCACTGCGCCTGGCCTCAAAAACTCCTTTTTTTAATAAACTCTACCTTGCCCATCATGAGGGGACATGTGAAACTGGTCAGGGCCAGGGAGAGGAGAGAATGACACACTCGGCATGTTTATAAATCAAAGACATGAGCCTGTCTGCTTTTCTTGCCATTACTACTATCAAGTGCACTTGCTCAGTGGAAGCGTGGGCCCAAGGAGAACGGGAAATCAGGAGAGCTAAGTGAGAATGTGCAGAGATTTCTATGATATGCCTTCATTATAAGTGAAGATAACAGTAACCACCATGGATTACATTTAAGCAGTAGGTTTAATACAAATTCATATAAAAGCACCTGTCCTGCCTAATTCCACGGCTCAGTAGACTGTGATGTCTCTTTCAGTTTGTGTAGGATTTTAAAAAATGAATAAAGCATGCACTTAGCATAGACAGAGGCATGATACCTTTGGAATCTGTCTGCCTTGAATGTGTTTTGATTTCCTGGTTTCTACTCTTTGTTGTACTCCCTTGCTCCGGATCTCTGTGTCAAGTGCATCAGCACCATCCTTCACAGCCAGAGGAGACACTGCCAGCTCCCAGCTCTGTTTTATCACTGCCCTGGCAGCCAATTTTCTCCCTCTCATCACCTTCCACCACCCTGAATCCTGAGCTCAGCCTGTCATTTTTTCACTTTAGGAAAGCTGCTGCATTCCTGTCCCCATCCCCAGCACCATCTTTTCACAAGTCTGGTACCAACTTCATCTTGATGAAGCAATTCCTGCAGAAACATATATAGCAATTGGGATGTTGTTTACCAAGCTAACAAATTAGCAAGCTAATAAGAAAAAGAGATACATTTCCACAGGTTTTGGTGCCTTAGCAAAAGTAGGAAAGAGGGATCTTCTGCAGTTTATGCCATTGCAGCATGAATAGAGAACTGTAAATCTCCTGGATCATGGGATACCAAGTCTGGGATGACACATGCTTTCTCTGGTATACACGCAGTGATGCTGGCAGAGTGTGTTAGATGAGCCTCTCCCTGCCATCCCTGCAGCTTGTGTTCTAGCATTGGCCAGGTGGATTGAGAGTGTGGCATTTGTGAAACAGTGGTGCATGTTCAGTCAACTGCAAACATGCGATTCTTCAGTCAGAAAAAGTAAGCCTTTATCGCAAACATGCTGTGGTTGTAAAAATTTATAGCAACCCACAGTCAAGTTAGGCAAAGGAATTGGAAGAGTGGACTAAGGGAGTTCATCTGATTTTTAGATACATGCCCAGAAAGTTAGAGAGAGATGAGTTTTAGTAGTCACTGAGTTTGTACAAGTTTTTTTGATGTGTTTTTGTTTTGTTTCATTTTTTTTTAAATATCTGATCATGGGTATTATTATTATTTTGAGATGGAGTCTCGCTCTGTCGCCAGGCTGGAGTGCAGTGGCACGACCTTGGCTTACTGCAACCTCCACCTCCTGGGTTCAAGCAATTCTCTGCTTCAGCCTCCCAAGCAGCTGGGCCTATAGGCACGTGCCACCACACCCAGCTAATTTTTGTATTTTTAGTAGAAACATGGTTTCACCATGTTGGCCAGGATGGTCTCGATTTCTTGACCTCATGATCCGCCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCATCGCACCTGGCTGATCATGGTTATATTTCATAGTGTTATTAAACTTTATCATTTATGATGCTTTTGGCCTGTTACCCAGTTTAATTCTCTTTAGAGGATGTATAGCCTGCTGCATTGTTCACATGGTATGAGGGAACAGATCTGGGAATCCTCCCTGATGTAGGGACAGTTCGTCCCAAGCACTGCCCACTTTATGCTTTCTCACACCACAGGACACTGACTGTGGTGTGAAGGGACCTTACAGCCCAGTCATATTCTGCCTGCGTTTGGAGTAATGGTGATCATAGCCAACACAGGTTGGGAAGAAATGAATGAATTCAAATGCAGATTGTGTTAAGTGTATGTGCATATATATGTATGCACACATATACACATATGTACAAATGTACCTACACAGACATCTATATATACATCTATATACCAGTTCTATTACCCCACTCATCTCTTCAACAGTGTGGCAGTAAGGAGCTCTAGACACAAATGATGAGAAGGAGGTAGAAGTGCTCCAGTGCCCCTGTTAGTTTTAATTTTAAGACAGATGGATGGACGGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAAGGTATCTTTTATCCATTTATTCAGTATCTACTGAATTTTTGAGGGTCTACTACGCATGGTTCGAGGTTGAGGATGAAATAATATTATGGCTGTGGCCTTATCTTTTTTTTTTTGATAAATAAATTTCCTTTTCCATTTTAAAGCTTTTGTAGATAGGTAGCAGGAAGAGAAACAAAGGTGTGTCCAGGCCCTCAGTATGTAGTGTAGATGAAGATTGTGTCTAGGGAAACAGTCAACATTCATTCCTATCCCTTGTTATCTGTGTGATCTTGGGCGAGTCACTTAACCTCTTGACCACAGTTTTTTAATTTGTTTCTGGCAGCCAGGGAGGTGGCCCATGCAGATTTTTGTTCCTGAAAGAACGTGCCATTCAGCTGTAAGGAATGTAGTGGGCAGACAAGCCTCCTGCTGGCATGTCAGCACCTTCAGGACAGGACTGTTTTGAAGCCAAAGCCATGCTCTCCCTGCAGCCCCAGCCAGTGACTGAGCACAAATGGGTCACTTCTCCTTCTCTGCTCCCTGCTGCCCCCAAGGAGGCTCTTGCTCTTCTACCTCCCTCTCATCATTTGCATCTAGAGGTCCCTACTGCCATACTGTTGAAGAGATGCGTAGGGTAATAGATCTGGTACATGGCGTATAGATGTGTATATAGATATCTGTGTATGTACATTTGTACATATGTGTATATGTGTCTATACATACATATGCACTTAACATAATCTACATTTGAATTCACTATTTGTTTTTCCACGACAAAATTTTCTTACTGAGATTTAAGTAAGATGGAAGTTTGTCCACCACATTTATAAGGCCCAAATTACAAAACAATAGGATTGCAAATGGAGTAAAAACCAAAGTAGAGAAAACTTATTGGGAGTTTCTTTGGAGGATGAAGAAGGGGTGAATGAGAGGAGAGAGGATGTGTAGAAATGCCTGGTGGGGCTTGGAGCAGTGGAAGTGGCCACATGGTAGAAATTCTACTTGTACACGTAGCTCTGTGGTTAAAATCAGTGAAGGGCTGAATTTGAAACTTTCATTAGTAGCACTAATAAGATTTTATTGGATTTAGAACATGCTGAGTATTATTGTAGTTTTAGAGGACAATTCATGACTCCATTTGTCAGCCTGGATTTGGGGATCTCAAGTCAGTTTACGTAATAGGACATCTCTCTCTCTCTCTGACTTCTGTTCCACTTCCTTGGTTTCCCCACAGATCCACATTCTGACTGGTTGTATGCAATGGAGGTCATGGAATAGCAGCCAGAAGTAAAACAGAAAAATAACCAAGCTCGGTTTTATTTTAAACTTTGAATCTGTGATTGCTGTGATTAAAAGAAAACGTACTTGATTATCTTCAAAGATCGTTACTGTAGGCATTACAGGTCTTCCTCCCAAACTGGTGTTTGATGAAGGAGACGTGCCTTTTCCAAACCTGATTAAATACAAGGGGGATTTTGTCTATGTGCAGAATTTAAATGATTCTCATACCGTAAAATTCCCACCTTTCCCAGCTTATGAGGTCGTGGTAACGATAGTGTTAATGATTGCACCGTTTCACTCACACTTTCAGGAGAATCCATGTTTCCAGCTTGCATATGATATATCACAGAGAAGGGTAAGGGCTAAGCATCTTAGAGAGTAGCAGAAATCATAATCTAGATAGAACTGGATGAATCTTTAATGCTGCAGAGCATACCTTGAGTTTTAGAACTGAAACTCTTGAAATAGAACAGTTTCTTTGGCTCTATCCTGGACTACTACCATACTGTATGGGTTTATATCTATCTATCTATCTTTGGTTCTCAAAAAATAGAAAAATAAATGAAGTCCTTTTTAGATGACAATCCATTAAAGAATGAATCACATTAATTAAAATATGATAATATTAAAACCTGATAATCTGACAATCTAAGTTGTATTTCACTACAGAAACAGTATAGAAAATAAATTCTCCATTTTCAGGACTAGGACTATGAAATCTGAAATTCTGGCTGAACATTTTAAGCATCCTTAATTCATTGATTGCCAAGAAGATATTGAGGTGGAAATGATAATATGAACAAAAGAATTAAGATGCAGTCATCTTTGGTTCACAGTATAGAGTCGAATATAAGTTGTTAACTGTCTGAAATAATGTTAACTACTTCTATGATGGATAGTTTCCTTTAAAAAATTATTATTGATGTAAGACTTAAATGGACTTGGTTTGTTATTGGATGGAGAAGCTGGCCTTCTGCATTGAGTATCTCTTAGCAGGAATGCATTCCTTTAGACCAATGTCTTACACATTGGAGGAACCAGTTTGTGGATCCTCACCACTGTTTTGTCATCTGTTCTGTGGAAAACTTTTTAAAAAAGCCAATTTTCAGACTTGTCATTCCAATTATATACTCATCAACACTTAAGAAAAATATTAAAAATCTGTCCAGTATAGCAACAGATGGTAATCTTTTTATTTCCTTTTGAATTAAAAAAAATATTATTAATGTTTATTAGTGTTTTTTGCTCAGTAAACTTTTTTTTTTTGCCAATTATCCATTAATTTCTTTTCATTATCTCTTGTGAAAAAAACAGAGCTGAAATGTGTCTCTGTACCCAATGGAAAACACCCTGACTGCTTTATCACCTTGCTGTTTAAAAACAAAAGCAACTTTTCACAGGCCGACACCTTTATTCAAGGATTATAAAAGAGAACAGAGAAATCTCTTTTGTCTTGAAATAGGAAAACTTGATCAAAGAATTAGGTATTGAAGCCTCTCTAGGTAGTGAATGTGTGAATGGGTGAGTGAATGAATCCAACAGCTTGACCTAAGAATGAAGCGTAGCAGGCTCTGAATTTTGTGCTCTCTTTGTTTCTCTGCGCAG
Seq C2 exon
AATTTAAGAAGAGGATTACCTCAGGTTCCTTACTTCAGTCTCTATGGAGACCAAGAAGGTGCTTATGAACATCCAGGCTCCAGCCTTTTCCCTGAGGGTCCTAATGACTATGTCTTCAGTCATCTTCCACTCCACTCTCAGCAACAAGTGCGAGCCCCTATCCCCATGGTGCCCGTTGGTGGGATCCAGATGGTTCACTCCATGCCGCCAGCCCTTTCCAGTTTACATCCTTCACCCACATTGCCCCTGCCAATGGAGGGCTTTGAGGAGAAGAAAGGCGCGTCAGGGGAGTCCTTCTCCAAGGACCCCTATGTGCTTTCTAAGCAGCATGAGAAGCGAGGTCCTCACGCTTTGCAGTCATCTGGTCCACCTAGCACTCCCTCCTCTCCTCGGCTGTTGATGAAACAGAGCACTTCGGAAGACAGCCTAAACGCAACAGAGCGGGAACAGGAGGAAAATATACAGACTTGTACAAAAGCCATTGCCTCTCTCCGGATTGCCACGGAAGAGGCAGCTCTGCTCGGGCCAGATCAGCCAGCGCGGGTGCAGGAGCCCCACCAGAACCCCCTGGGAAGTGCACATGTTAGCATTAGACACTTTAGTAGACCTGAGCCAGGTCAGCCCTGTACCTCAGCCACCCACCCTGACTTGCATGATGGTGAAAAGGACAATTTTGGTACATCACAGACTCCATTAGCTCACTCCACGTTTTACAGCAAGAGTTGTGTGGATGACAAGCAGTTGGACTTTCACAGCAGCAAGGAATTATCTTCAAGCACAGAGGAAAGCAAAGATCCTTCATCAGAAAAGAGTCAGCTACATTGATCTATGATGCATGGAGACTTTCATTTCCACATTTTCCCATTTTTTTGTTTTTGTTTTTCTAGAAATGGAGGTAATCCAGTTTATAGCATGCCTGTCCTAAGTTACAGTAGTTTGCTATTATATATACTTTTGTTATATCAAAAGAATTAGGTAAATTAACAAGTCATCATGAGCCTGACCAAAACAAAATTTGAAATTAACCTATTGGGTCTGGTACTTTTAAAATTGTACAGATGTTTGTGCCTTTTCTTTACTTTGCTTATATTCTTATAAGCATTTTTTAGCAGTAATTTGTACATATTTTAGAATTTGTGTATCTGCTTTGTAATAAATGTAATTTCTTTCCTTTTTTGGACACTTGGATCTAAATGATGTAAAGCAAAACAGCATCAATATATATGTGAGGTTGCACTAAAACATATTTTTATATGATTAAAACTGAACAGCTTTTATGTACAGCTCTGATTCTGTAATACTAATATTTATTTACTTTGTTTCATAAATTGTACATTTTTTCTTAATGTTGTGGATTGCTTTTCTATGTGAAGCATGGGATTTACTGTTGCGTAACTAGAACAAAAATGTACATTGTAAACAAGATATTTAAACTAGAGTATCTTATTCTGCACTTATGCATTAGTTAAAAAAAGATAAAGGATGTATCAGTCAGTTCTTAACTCTTGTATATTTTTTTGTCTCTTGTTTGCTGGATTGACTATAACTTAAGTGCTGATTGTGATTTTAAAATGATAGTACCGTAAAGCATTAAAGTAAACAATGTGCTATTGTGAGTTTTTTCAAAGCTTTATAAATCAGTTATAAATAATATTAAAAGTATTTGGTCTTATGTGAACATGTTGATCTATATACTCATCTAAAAATATGGGAAAACATTCCACCCCATGTAAATATGTACAAGTGCATCACTGGTACAATTTTATGTAACTCAGTTGGACACTAGGTTGCCACAGACCTATGCTAGGTGTCTTTAAAAAATTAAGGTGACAAAGCACATGGGACTGTGTAGAGCTTGGTTATCGGCCGGCCCGGTGGCTTGGCAGGCAGTGCTGTGCGCTGCTCATGGAGAAGACCTGGGCTTAGCAATCTCCTTAGTTCTTGCTACACAGGATGGTGACTGGAACTAAGGCTACACAGAGGGTCGCACTTGGACTCTGAGGGTTGGGTGTGGAAGGGGGAAAAGGAGATGGAGACCTGCTCCCCAGCTCTTCCTGTCAGCCGGTTTACATGGGAACAGGGTTAACATCTGTGTTAGGGGAGGTCACCTTACCCTTTTTCATAGGGGAAGAGTGTCACACTCCTGGCTATCTCAGGGGGAATGGGGAAAAGAATCTTTCAAGGGCAAAGAACTCGTGGGAGGATGTCTGTTGTATGTAATACTCACAATGGCTTTTGGTTAGTGTTGAAGGTGGGAAGAGCATTTGTAGGTCCAGAAGAGTGAAAGAGAGGGAGGGGTGCAGCAACATGTGCACAGGCACGCACATGTGTGCACGCACACATACAATCTGGGTTATCTTTGTGCTATATAGTGGATTATAATTCTGTGAAACCAAGTTTGTATATTGAATTACATTAAGGAGTGTTCTTTAAAAAGAGAAATAAATATACAATTACATGCTTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000010818-HIVEP2:NM_006734:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.943 A=NA C2=0.847
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)