DreINT0007902 @ danRer10
Intron Retention
Gene
ENSDARG00000018773 | CR628323.1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1RDL5]
Coordinates
chr17:6234706-6237333:-
Coord C1 exon
chr17:6236639-6237333
Coord A exon
chr17:6235339-6236638
Coord C2 exon
chr17:6234706-6235338
Length
1300 bp
Sequences
Splice sites
5' ss Seq
GTGGTATGC
5' ss Score
5.97
3' ss Seq
AACAATTATTCTTTTTTCAGGAT
3' ss Score
9.55
Exon sequences
Seq C1 exon
ATGACACCCAGAAATCCTTGGGCATCATGCCAGCGGAACAAACCATTAAACATCAATTCTCAGATGTGGAGGATTCTGATGGTGCCGATGAGGATGAACCAGACGAGGATGAAGATGATGAATGTGATGGTGATTCTACACCAAAAACGTTGTCTAGAAGCACAAGTCCTCAGTCCTATGCTGTCAACAAGCCATGTATGTCTGGCTGCCTCCCTAAACACTTTGACTCAGGCTGCAATCTACCAAAGGAGCAGCTTGAAGCGTCCTCTTTGACTATTGAGGATGACCTGAATTCTGATCAGTCAAGCTGCTCCTTTGAGCTCTGCCCACCTCAGCTGCTGTCACCTTGTTGGGACTCACCTCGACAGAGGTACATGTCCCCAAGAGGAGATCTCTCACCCCAACGTCACCTACTGTCAAGCCGAGATTCATCTCCATTAAGGGCCGTTTCTCCCAGGAGAGATTTGAGCATCAGAGGGGATTTTTCACCCATTCGCCAGCTGTCACCTGTAAGACCTACAGGTTTGGACACATCAGGACAGCGAGCACAGTCTCCACTGGGTCGACATAAAGTAGCGCTCAGGGCTGTGTCTCCACGAAGGGGGTCTTATCAGCACAGGACCCACATGGATCTGGGAAGGAGTGTAAGATTTCAAGCTTCGCCCATTAGACCAATCATTGGAGAGACAGGAGTG
Seq A exon
GTATGCTTATCTTTTTACTTTTGGCAGCGACTTTTACCCACAGCAACTAGCATTGCATTCATGGTGCATGTTTTAAAAAGTTCTCGCTTGTCCCATTTTCTACTGCAAAGGTTCTCAATTCTGGCACTCAAGATCCGGTTTGAGTTCTAAACCTAATGTTATACACCTGATAGTGCGAATCTAGCTAATATTTGAGATTACTATAAAGGTACAGACAGGTGTGTTTGAGCAGGGTTGGAACTGCGGTCTGTGAGACAGTAACTCTTTAGGAGCAAGGATTGACTGCACCTGATCATGGAAGGCTACTGTCTTGCAGACTTCACTTCCATCCCAGCCTAAACACACCTGCCTTTATATATCCAGTTAACATCTTGATAAGCTGGTTCAAGTCTGTTTAATTGGTATTGGAGGTGAAATCTGCTAGACCAGGGGTCACCAAACTTGTTCCTGGAGGGCCGGTGTCCTACAAATCTTAGCTCCATACCTAATCAAACACACCTGAACAAGCTAATCATGGTCTTAAGCTGCGGTCACATTGGGCTTTTGCTCCAATAGACTTCCATTCATACACACGCGAATGCATCAGACTGGAAACGCGGGGTCATGCGTCTAGTTTTGCAGGTTGCTGCGGTGCAAAGTTCAAGCTTGGTGAACTCTAACCTGCAAAATCGCATCACTTGACTGCGTGAGACTAAACAAAGATCAAAACATGACATCCCTGGACAGAAATTTAAAACATGGAGCAATCGCTCACTTTTTTAATGTCTAATAATCTTGCTTAATCCCGCCCCTTTTCGCAGAGCCATATGACAGAATTGCGCATGCTCAAACTCTAATGTGACCGCAGCTTTACTAGGTATACTTGAAACATCCAGGCAGGTGTGTTGAAGGATGTTGGAGCTAATCCCTGCAGGGACACCGGCCCTGCAGAACCGAGATTGGTGACCCCTGTACTAGACAGCTGCTGTACCGACCAGGCCGATCACTCCTAAATTAAAGTGGACCTCAAATGCCCAAGTTGAGAACCACTGCTTAACTGATTTTGCTACAGATATTCATGTTTAGTTTTATATGTTCCTTTGGGGACCCCAGCTATGGTTACTATAAACTTTGCATAGCTATGTGAAGATTCCTACTGTACTGACAGAATGGAATGGGTATATTGCAATATGTGCAATGCTGTTTAGTTGCATAATAGTAATAAATATTTAAAACAATTGTCACACCAGAACTACCAGAACTGCTATTTTACATACCTAAATGAGTTAGTCGGCATAACAAACAATTATTCTTTTTTCAG
Seq C2 exon
GATCAAGGGGATACTTCTCTTAATCTCATTGTTCCTGTTGGCCTATGCAGCAGTAAAGATCTGCCAAAAACCCGGCAGCCAGACATCTTCAGCCATTTGCCTTTGCACTCTCAAGGACAGGTGTCAACACCTGTTCCAATGGTCCCTATCGGAGTGTTAAGAATGCCATCAATATCGACCTCTGGTGCTGTTGCGGAGAGAAATTCGCTCCCATCAATTCCACAGGGGAACATTTTAGAAACGGCTGCGCCGGGCCAGACATCAGCCTCTGTCCCAGATCCAGCAGTGGCCTACAGTGGAGAAATAGCAACCTATTCCACTGGCCTTCCTAACAAAGATGATAAGAAGGAGGAGAGTGTCTACACCTGTGCAAAAGCTATTGCTTCCCTCAGAATCACATCTGAAGATGCCTCCGATAATCCACCTAAAAGCTGACTTTAGAAACAATGTATAAACGCATTCGAAAGCAAAACTAAATTCAAGCTCAAACCAGAAACATACGTTATGCAAGTATTCAAAGATAGGGAATGGTTGTTTTTATTGTTTGTGTTTTTGCATTGCACTGGCGGTAGCAATCTTCTCTACTCCCGGGGGCGTTCAGATTACCTTTAATTGTCTGTGCCATTAAAACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000018773:ENSDART00000022010:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.754 A=NA C2=0.597
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGCTGTCACCTGTAAGAC
R:
AGGGACCATTGGAACAGGTGT
Band lengths:
347-1647
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]