BtaINT0072268 @ bosTau6
Intron Retention
Gene
ENSBTAG00000001146 | HIVEP2
Description
human immunodeficiency virus type I enhancer binding protein 2 [Source:HGNC Symbol;Acc:HGNC:4921]
Coordinates
chr9:81237678-81246098:-
Coord C1 exon
chr9:81245203-81246098
Coord A exon
chr9:81238503-81245202
Coord C2 exon
chr9:81237678-81238502
Length
6700 bp
Sequences
Splice sites
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
3' ss Seq
TCTCTGTTTCCCCGATGCAGAAT
3' ss Score
9.03
Exon sequences
Seq C1 exon
AAACAATGGAAGATTTGCACAAGGCAAGTGAGAAGCACAGCATGTCCAGCATTTCAACTGATCATCAGTTCTCAGATGCTGAAGAATCGGATGGTGAAGATGGAGATGATAATGACGATGACGACGAAGATGATGAAGACTTTGATGACCAAGGAGATTTGACACCAAAAACAAGATCAAGAAGCACCAGTCCCCAGCCTCCTAGATTCTCCTCCTTGCCGGTGAATGTTGGCGCTGTGCCCCACGGGGTTCCTTCCGATAGCTCCCTGGGGCATTCTTCATTGATCAGCTATTTGGTTACGTTGCCAAGTATTCAGGTTACTCAGCTGATGACACCAAGTGACTCATGTGAAGATACTCAGATGACAGAATACCAGAGGTTATTCCAGAGCAAAAGTACAGACTCAGAACCAGACAAAGACAGGTTAGACATCCCCAGTTGTATGGATGAAGACTGCATGCTGTCTTCAGAGCCGGGCTCCTCCCCACGGGACTTCTCACCCTCCAGCCGCCATTCCTCTCCAGGATATGATTCTTCACCCTGTCGAGATAATTCACCAAAGAGGTGTCTGATACCCAAAGGGGATTTGTCACCCAGAAGACATTTGTCACCTAGGAGAGATCTGTCACCCATGCGACATCTTTCACCAAGAAAGGAAGCTGCCTTGAGAAGAGAGATGTCACAGAGAGATGTTTCGCCAAGAAGGCATCTGTCCCCAAGGAGGCCAGTGTCACCTGGGAAAGAAATCATGGCCAGGAGGGACCTCTCTCCCAGGAGAGAGAGAAGATACATGACCACCATAAGAGCACCATCTCCCAGAAGGGCTTTATACCACAACCCACCATTGTCCATGGGGCAGTATTTGCAAGCAGAGCCAATTGTATTGGGGCCTCCT
Seq A exon
GTAAGTATCCTTAGTTTTCTCTTTCTAATATATAAGCCCAAGCTCATTGGAGCCTCTTGATGACACACTGGTGTGAAATTTATTATGACATGGGTATCTCTCATGGGGAGGAGTGAACTTGGTTACTGAAAATAGCAGGAAGGCATTTTTATCACATGCTATTGTCAATCACATGGCTATGGCGTTACCCCAAGTGTAGTATTGCATCAGAGAAGAGCATTTCAATCTGGTAATGACAGGTGAGATCTTTCCGAATGCTTTCTAAGCTTAACTCATTATATATAGGCAGGAGTTGAAACCTTGGCATGAGTGGAAAAGGTAAAAAGTCTTTGGAATGACATGACTGCCTAGACAGACAGTCTGAGGGATATTTAGGTATCATTTATCTAACTCTCTACCAGGTGAAAATTCTGATTCAGGCATTAGCATTGACTTTCAATCAAAAAAAAATTTTAAATAAACTAATTACTTTGCTGATAGTGAGTGGATGTGTGAAACCAGTAAGGGACCAGGAAAGGGGAGAGTGAACCCTGTGGTATAAATGAAAGGCATGAACATGCCTGCTTTTCTTGCTGGTCCCACCACCTCCTGTTACCAAGAGCCCTTGTTCAGTGATATTGTGAGCTCACAAAGTGGGCAGTCGGAAGAGGTAAGGGAGAAAGCATCAGAGGAGATTTCTGTGGACGCCCTCATTATAGATTAAGATAACAACAGTAGCAATCATGAATGAAATGTGGGCAGTAGGGCTTAATGCACATCCATAGAAGAGGATCAGCCCTGCCTCACTTCACCAACATGATAGATCTTGATGTCTTTTTCAACTTGTGTGAAAAAAAAAAAAAAACGAAAGAAGCAGGCACCTAGCATACCTAGCGTAGACAGAGGAAGGATACCTTTGGAGTTTGGCTACTTTAAATGTGCTTTTTGTTTCCTGGGCTCTATTCGTGGCCATTCTCTCTTTGCTCTGGATTTCCATCATGTGGGTCGTCACTGCCCTTCACAGCCAAGGAAGACTACCAGCTGTCAGCTCTGCCGTCTTATCACGGCCCTAGTGATCAGCTTCCCCTCTCTCATCTTCTTTTCACCATCCTGAATTAGATGCTTAGATTCACATTTTGAGCTTTAGGAAAACTCCCTGCTGCATTCTACTCCCCAGCCCCAAGACCCTCTTTACAAGCCTGCCACCAGCATAGCCTCAGGGTACAATGACTGTAGAAACATGCATAGCAATCAAGACATAACTTCGCTGCTGAGCTAATAAATTAGCCAGCTAAGAAAAAGAGGGGCATTTCCTCAGGTTTTTGAGTCTTAGTGGTACCAAGTAGAAAGGAGGGCTCTTCTGAAGTTCATGCTATTGAAGGATAGAGTGAGAAGTCACTTTCATACCAGAATACCACATCTGGGGTGGAAAATGCTTTTTCTGGTATTTGTTGTTCAGTCACTAAGTCGTGTCTGACTCTTTGTGACCCCATGGATTGCAGCACACCAGGCTTCCCTGTCCTTCACTATCTCCAGAGTTTGCTCAGACTCATGTCCATTGAGTTGATGATGCCATGTCATTCTCTGTCGTCCCCTTCTCCTCCTGCCCTTAGCTGTTCCCAGCATCAGGGTCTTTTCCAATGAGTCAGCTCTTTGCAACAGGTGGCCAAAGGATTGGAGCTTTGGCTTCAGTATCAGTCCCTCCAGTGAATATTCAGGGTTGATTTCATTGACTGCTTTGATCTCCTTGCAGTCCAAGGGACTCTCAAGAGTCTTCTCGGGCACCACAGTTCAAAAGCATCAGTTCTTTGGTGCTCAGCCTTCTATATGGTTCACCTCTCACATCTGTACATGACTACTTGAGAAACCATAGATTTGACTAGATGAACCTTTGTTGACAAAGTGATGTCCCTGCTTTTTAGTAATCTGTCTAGGTTTGTCATGGCTTTTCTTCCAAGGAGCAAGCGTCTTTTAATTTCATAACTGCAGTCACCATCCACGGTGATTTTGGAGCCCACAAAAATAAAGTCTGTCACTGTTGCCATTTTTTCCCCATCTATTTGCCATGAAGTGATGGGACTGGATGCCATGACCTTAGTTTTCTTAATGTTGAGTATTAAGCCAGCTTTTTCACTCTCCTCTTTCACCTTCATCAAGAGGCTCTTTAGTTCCTCTTTGCTTTCTGTCATTAAGGTGGTGTCATGTGCATATTTGAGACTGGTGATATTTCTCCTGGCAATCTTGATTCCAGCCTGTGATTCATCCAGCCTGGCATTTCACATGATGTACTCTGCATATACGTTAAATAAGCAGAGTAATAATTACAGCCTTGATGTACTCTTTTCCCAACTTAAACAAGTCCTTTGTTCCATGTCCGGTTCTAACTGTTGCTTCTTAATCTGCATACAGATTTCTCAGGAGGCAGGTAAGGTGGCCTGGTACTCCCATCTCTTGAAGAATTGTCCACAGTTTGTTGCCATCCACACGGTCAAGGCTTTAGCATAGTCAATGAAGCAGAAGTAGATGTTTTTCTGGAATTCCCTTGTTTTTTCTATGATCGAATGGATATTGCCAGTTTGATCTCTGGTTAGACCCAATGGTGCTGTGGAGTGTGTGAGCTGAGGCTCCCCCATTCTAATTGGCCTAGTGGGTCAAAACTCTGATATTTGGGAGATGTTGGAGTATATCCAGTCATCTGTAGGCATAAAAAATAATGCTTTGGTGCCAACACAGTATTGTTATTAAAAAATAATAGCAACTCACAGTCACTTTGGGCAAAGGAAGCAAAGAAGTGGACTTAAAGACTTCATCTAATTTTTGGATCTCTGCCCAGAAAGTTGTTGTTGAAAAGAGATTGGTTTTATTAGTGATTGAATTTGTATTTTTTTTTCATACCAGTTCACCTGGATATTTAACAAAATTGTTGAACTTTACCATTTATGAAGCCCAAGTGTTGAGCTTTTGCTCTATTACCCAGTTTAATTCTCTGTAGACAGTTCTTAACATGCTACTTTGCTCATGTGATAGGAAAGAATAGCCCTTGGAATCCTTCCTTAAGCAGGGACGCTTGGTCTCTGATGCTTCCCATTTGATGCTTTAGCACTCTGTTTTTGAGGGGCAGCAGAGAATTTTTGTCTTTCTATGATGTATGGACAAGATTCTCATTGTGAAAAAGAATCAGTGATCCTTTAAGGAGTACTTCTCCTGACTGCTGTAGTAGATGAGTGCTTCCCTCTCTCTGAAGAATGTATGTTGTTCTTCTTCAGTCACTAAGTCGTGTCCAGCTCTCTGTGACCCCATGGATTGCAGCATGCCAGGTTTCCCTGTCCTTCACTATCTCCCAGAGTTTGCTCGGACTCTCATGTTCATTGAGCAGATGATGCTATCCAGCCGTCTTATGTATGAACGTATTAAATTGGAATAACCCTAAAGATAATTATTTTTGATAGAAATTCTGTTAGCAATACCTGTGGTTTAACATTGACCAAGCGCTCACAGGGCAGTTACTCTGGCATTGAAAGGACCTGGTAGCCAAGCATGGCACACTCGTTATCTGCTTCAGCCTGTAGTGGTAGGTTCCAGGGAGCAAGTTTGGAGGAGATGATATGCAGTCACTGAGATTCTAGAACCCTTCTATTTCTGCTCTAGTGTCCTTTGGTTAATTTTCATTTTAAAATAGATGCTAGGTAGGTAGGTAGATAGGTAGATGGATGGATAGATAAAGAGAAAAGCAAAGAAGAAATAAAGAGAGGGAAGAAAGGAGGGAGGGAAGAAGGACAGAAGGAAGAAAGGAAGGAAGAGGAAGAGAGAAAGTCTTTTATTCATTCGTTCAGTAAATATTTTTTGAGGGTTTAATCATATGTGGCTCAGTGATGATGGTGGAAAAATTGTATGGTTTCTGGCCTCATCCTTTTTAAACAAGAATTGTTCCTTTTCCACTTTTAAAGTTTTGGTAGATAAATAGCGAGGAGACAAAGAAAGTGTGTCCTGGTCCTCAGTGCAGAGCGTCCGTGGACACTGTCTAGAACAAGCGCCATGACTTGGTTCCAGCCCTTGCTCTCTGTGTGGTCTTGGGCAAGTCACTTAACCTCTTGGGCAGTTTTTTCATCTGTTTGTGGCAGCCAGGGAGGTGGGCCAAGTAGACTTCTGTCCTTGAAGGAACTTACCATTCAGCTGTAAGGAATGTAGTGAGCTAACAGCCTCCTGATGTTCGAACCTTCAGGATAGACCTCCGTTTTCAAGCCAAGGCCACGTTCTCCCCTGCAGCCTCTATCAGTGGCTGAGCCTGGATCAGTTCCAGCTGACCCCCTGCTTCCTCTCCCTGTTAGCGCCACATACCTTATATCCCTGCTCCCCCATCACCAACCCCAGCCGGAACTCCTGTACCTCTACCTCCTTCTTATCCTTTGCTTCCAGAGGACCTACTGACACTGTTGAAAAGATGAGTTGGGGTAAATATTTGGTACATAGGATACAGATAGATATACACACACATATGCATACACTTAGCACAACCCACACAGGCATTCATTATTCATATTTCTGTGTCAAGATTTTTAAGTAAGATGGGAGTTTATTCATATTAAAATGGTAAGGCTCAAATTGTAAAACAAGATAAGGTTGCAAATGAAGTAAAAATTTGAGTAGAAAAATCTTTTGGAGAGTTATTTGGAAGGTGAAGAAGGGGTGAGTCTGAGGACAAAGAGTATGTGAAAGGCTTGGCAGTATCCGGAGCCATGGAAGTGGTTACATGATAGGAATTGTACACTTGCTTCTGTGGTTGTAATCATTTAATGTCTGGTCAGTAAAAGTCTGAATATAACACTTGTATTCTTAACACAAAATTCTATTGGCTTTTGAACAGATTGAATACATCCTATTTTTAGAGGACACTTCATCACTCGCTTTGTTGGACTTGAGTCAGAGATCTTATGAAATAGGACAGCTCTGTCTTTGGCTGCCTCACAAACCCCCATTCTGATTAGGTATATACCGTGGACATCACAGAATAGCAACCAGAGGCAAGATGGAAAAAGAGCCAAACTATGTTTTATTTCAAACTTTACATCTGTGATCGTTGTGATCCAAAGAAGATTGATTTGGTTACATTCACAGGTGGTTATTGTAGGCATTATGATCTTCCACCTTACCTAGTGTTGGATGAAGTAAACATGCCTTTTTTAAACCAGAGCAGATAAATGCAAGAGGGATTTTTTTAGTAGTATTTAATGATTTCTTTCTCATACCACAGAATTCTCCCCTTACCTAGCTTATGAGGTCCTTAGCTTATGAGGATTGATGTTTACATGATTTCTCCTGCACTTTCAGCACAAGTCATTTGTTTTTGGCTTGAATAAGATGAAGCCTAGAACAGGGTAAGGGCCAAGAATGGTACAGAGTAGCAGAAATGATGGATAATTTATCATTCCTAACCTGGTCTCACAATCTAATTAGAACTGGATGAATCATTAATGGTATAGAGCACACCTTGCATTTTTGACCTGAAACATTCTTAGAATGATGGCACAGTGGTAAAGAATCTGCCTGCAATGCAGGAGACACAGGTTCAATACCTGGGTTGGGAAGATCCTCTGGAGAAGGAAATGGCAACCCACTCTAGTATTCTTGCTTAGAGAATCCCATGAACAGAGGAGCCTAGCGGGGTACAGTCCATGGGGTCACAAAGAGTCAGACATGACTGAGTGACTAACCATGCATGCATTAAAAGGATGAATCTCAATTAATTGAAGCTTCGTCATCTCATTTAAACCCGATAATCTCACAGTTAGGGTAGGTTTTGCTATAGAAACAATTATACAAAATGGGTTCTCCGTTTTCAGGACTGGGACCATGAAATCTGGATTTCTGGCCCAAAACCTTAAATGTCCTAATTTATTAATTGCCAAGAAGATTTTTAAGTGGAAATAATAACACAGAAAAATTAAAATACAGTTATTTCTGGTTCCCAGCCACATAGTCTATTATAAATTATAACTATTTGAAATACTTAACATTAACTACTTTGATGCATAGTTTTCATACAAAATCTGGCCTTGAATTACGGTTTGATGGAGATGCTGGTGCTGATCTTCTGCCTCGATGCCTCCTGAGCAGAAATCTATTTCTTTAGAGCAGTGTCTTGCACATTGGAGGGACCAGTTTGTGTATCACCACCATTTTGTTATCTGTTCTGTAAAAGACTAAAAAAGAAAAAAAAGAGAGCTAATTTTCAAGCTTGTCACTCCATTTATATTCATCAACACTTAAGAAAAATATTAAAAATCTGCCCAGTATATAAACAGATGGTAATCGTTTAACTTTCTTTTGGATTTAAAAACTTGTTATTAGTGTTTTTTGGCTCAGTAAAGTTTTTCTGGTAATTATCCATTATTTTCTTTTCATTCTGTCTTACAAAAAAAAAAAAAACACCAGAGCTGGACCGTGTCTCTGTACCTAGTGGAAAACACACTGCAGGTTTTATCACATTCCTGTTTAACAACAAAAGCAACTTTCACAGACCTACCTGCTTCATTCAAGAATCCTAAAAGACTGCGGAGCAAACCTCTTTTGTCTTGAGAAATCAAAGAGTGATAGAAAGATTAGGGAGTCTTCACGTGTTTTAAAGGAATGAGTGAGTGAGTGAGTGAATGAATGAAACAGCTTGACCTAAACGTGAGGCATGCTGGGTCCTAAGTGTTGTCTCTCTGTTTCCCCGATGCAG
Seq C2 exon
AATTTAAGAAGAGGATTACCTCAGGTTCCTTACTTCAGTCTCTATGGAGACCAAGAAGGTGCTTATGAACATCCAGGCTCCAGCCTTTTCCCTGAGGGTCCTAATGACTATGTCTTCAGTCATCTTCCACTCCACTCTCAGCAACAAGTGCGAGCTCCTATCCCCATGGTGCCAGTTGGTGGGATCCAAATGGTTCACTCCATACCGCCGGCCCTTTCCGGTTTACACCCTCCACCCACATTGCCTCTGCCAATGGAGGGCTCCGAGGAGAAGAGGGGAGCCTCAGGGGACTCCTTCGCCAAGGATCCCTACGCAGTTTCGAAGCAGCACGGGAAGCGGTCGCCTTACGCTCCCCAGTCATCTGGTCCACCTAGCATGCCCTCCTCTCCGCGGCTCCTGATGAAACAGAGCACTTCAGAAGACAGCCTAAATGCCACAGAGCGGGAACAGGAGGAAAACATACAGACTTGCACAAAAGCCATCGCCTCCCTCCGGATTGCCACAGAAGAGGCCGCTCTGCTTGGGGCAGATCAGTCAGCTCGGGGGCAGGCGCCTCATCAGAAACCCTTGGAAAGTGCACAGGCTAGCATTAGACACTTTAGTGGACCTGAGCCAGGTCAGCCCTGTACCTCAGCTTCCCACCCTGACTTGCATGATGGCGAAAAGGACAATTTTGGTACATCCCAGACTGCATTCGCCCACTCCACGTTTTACAGCAAGAGTTGTCTGGATGACCAACAGTCAGGCTTTCAAGAGAGCAAGGAATTACCTTCAAGCACAGAGGCAGGCAAGGAACCGGCTTCAGAAAAGAGTCAACTACATTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001146:ENSBTAT00000001526:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.957 A=NA C2=0.828
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]