MmuINT0077945 @ mm10
Intron Retention
Gene
ENSMUSG00000015501 | Hivep2
Description
human immunodeficiency virus type I enhancer binding protein 2 [Source:MGI Symbol;Acc:MGI:1338076]
Coordinates
chr10:14143059-14151373:+
Coord C1 exon
chr10:14143059-14143954
Coord A exon
chr10:14143955-14148911
Coord C2 exon
chr10:14148912-14151373
Length
4957 bp
Sequences
Splice sites
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
3' ss Seq
TGCTCTGTTTTCCTGTGTAGAAT
3' ss Score
10.8
Exon sequences
Seq C1 exon
AAAATATGGAAGAGTTGCACAAAACATCTGAGAAGCACAGCATGTCCGGCATCTCCACTGATCACCAGTTCTCCGATGCGGAGGAATCGGATGGGGAAGATGGAGATGACAACGATGATGATGATGAAGATGACGATGACTTTGATGACCAAGGAGATTTGACACCCAAAACAAGGTCAAGAAGCACCAGTCCTCAGCCTCCTAGGTTCTCCTCCTTGCCTGTCAATGTTGGCGCTGTAGCCCATGGCGTCCCTTCAGATAGCTCTCTGGGACATTCGTCATTGATCAGCTATTTGGTCACTCTACCGAGTATTCAGGTTACTCAGCTCATGACACCCAGTGACTCTTGTGATGACACTCAGATGACAGAATATCAGAGGCTGTTCCAGAGCAAAAGCACAGACTCTGAACCGGACAAAGACAGGTTAGACATCCCAAGCTCCATGGACGAAGAGGCCATGTTGTCTTCAGAGCCAAGCTCCTCCCCAAGGGACTTCTCCCCCTCAAGCTACCGTTCCTCCCCAGGCTATGATTCTTCACCCTGTCGAGATAATTCGCCAAAGAGGTATCTGATACCCAAAGGAGATTTGTCACCCAGAAGACATTTATCACCTAGACGAGACCTGTCGCCGATGAGGCATCTGTCACCAAGAAAAGAAGCTGCATTGAGGAGAGAGATGTCCCAAGGGGATGCCTCACCAAGAAGGCACTTGTCCCCAAGGAGACCATTGTCTCCTGGAAAGGACATTACAGCAAGAAGAGATCTCTCTCCCAGAAGAGAGAGAAGATATATGACCACCATCAGAGCACCGTCTCCCAGAAGGGCTTTATATCCTAACCCTCCATTATCCATGGGACAGTATCTACAAACAGAGCCAATTGTATTGGGGCCTCCT
Seq A exon
GTAAGTATAGCCTGAGTTCTCTTCACCAGAGCTGCAGAGCATTAGAACCTCCTATAGGATAGTTATAAGGCATTTATTATAATGTGGGTGTAATGAACCTATTAATACAAATAGCAGGGAGACATTTTATCACACATCGTGTTGGTGACATGGCTGTGGCATTATTCCAAGTATAAGATTGTATCAAAGCAGGAGTGAACTTGCAGGTAGGAACAGGAGAAGCCTTCCGAATGTTTCGCAAGCATAACTATAGACTTGAGCCAAAACCCTTAGGTGACGCCCCAGGTATGGCATGCTTATGAAGACAAACATGAAGACAGTAAATTGTTAGTGATATTTACACTTCAGCAGGGGAGGACTCTGATGCAGGCTTCGTCCTTGACTTCCAAAATGATTTTTAAAATATACTCATTACATTGCCCAACATGTGTACATGTGCAAATGGTCAGGGCCTGGGAAAAGGTGGTGTGACACTCTAGTAGCCCATAAGGTAAAGACATAAAGGTTTCTGCACTTTTTTTTCCTGTTGTTGCTGTTAGCACCAGGTGTAGATGCTGAGGGAGAATTCGGGCCAGAGAATGAGCTGTCAGAGGGCTCCAGAGAATATTCTGAGGGGTCCACCTTTTTCTTGTATTATTAAGTAAGATGACAGCAGTAGTGGCTATGGGCCACACTGAAACCACAGCTTTACTGAAAAGCTACAACGGAGCCCCTCCTCTCCTCATTGCACAGCAGCCTGGCAGATCATGGTGTCTCTTTCCATTGGGGTAGGATTGTCAAAGAGCAGGCAGAGAGCACAGAGGCATGCTGCCTTCTGAGTTTGTTTGCTTTAAAAGTGGTGTTAGTTTCCAGATCTTCCTTCCTGCCCTCTTTCCTCTGTTTTCTGTCTGGCATAGCATGGTCTTTCTCAGGCATAGAAGGCACTGCTAACTCCTCGCTCTGTCTGCTCCTGCCCTGGTAGCCAGTCCCTTCTCTCTCATTGCCTACTGCTATCTTGATTCATGAGCTTACACTGCCATTCTCAAACTGTAGGAAATCTCCCAGCCTTCCTTGCAGTATCCTCATCATCCTTTTTTCATAAACCGGGAGCAAAGTTCATCTTGATGTTGCAATCCTGCAGAGATGTGCCCTGATGTCTGCACCCGGCTGATTTCAAGCTAGTAAATTAGCAAGCTAGGGAAAAAAAACATCACATCTCTGCAAGTTTCTATATCTTGTGCTACCTAAGTCACTATATAGTTACTAGGAAGCTGGAAATCCCTCTGATGATTCCTGTGACAGAGACATGGTGATGCTGGCAGGGTGCGCTAAACTAGTCCTGATCCCTCCTTCCTGAGGCTTTTGAGTCAGCTTTTGGCCAAGCAGACCATAACTGGCTTCTATGAGTCAATGGAACACATTCAGGTTACCATGTCATGAAAACAAAGCCATTGATTTAACATGCTGTTAAACTCAGGCCAAGGAATTCATTAACTAATTAAGAATAAAATAAAACAGAATAAAATAATTCATTTATTTTGGACCTTTGAATCCCTACAAAGTTAATTAAGAAATTTAGTGCCAAACAAGAAAATAAGTTTCACCAGTTACTGAGTTTTTCCTAAATTTTTGTGTGGTTTTATTTCATTTCATTTTGTTCCTAAAATCTCTGGATGCCTCACAGAGCTCATCCTTCATCCCCACCAAATCCTTTGGCTTGCTACCCAGTCCAGTTATCTTTAAAGAAAAAATGCCCCCTTGCTGCTTGTTCTCATAGGAGGCAGCAGAGCTGGGATTCAAGCAGGAGCCCTGTCCTGAGTCCTCATGTTGTGTTGACTGGTCGCCTCTGGATGGCAGTGACAACTATATCTTTCTGTGATGTGTGAAAGAGACATTTCTGGTCAGAGAAAAATAGACCTGACCATGCTCTGACAGGTGTCCCTTCTGACTGCTCTGTAGGATGAAGACTTTCCTCTCTCTAAAAAAATGTATAGAAAGGATTATGACCAGCCATTGTCCCTTGTCACAGAAATTCTGTCCTGCTACCTTGTCATTTTGCACACCTTGATGGAAGCTTTACAGGGCAATGACTGGGGTGAAGGGACTATGACACCCAGGATGACATAAGATATAATTGGTTTAGTCTGAACTTAGAGCCAGAGAGAAGGTTTAGATGGAGAAACACACACCACTAGGATTCCTCCTCTAACACTATCTGGTTCATTTTAATAGATAGTAGAATTTAAAAGTGTCTTTATTCAGTCAGTCACCATTTTTGAGGACTGGAACTGGAGTATGGTTCAAAAGGGAAATATATTACAGTTACAGCCTCATTTTCTTATGCATATCTGTTTCTGTGTGTAGATGAAGAGTGTCTTCAGTAAAGCAGTCAGTGCTCAGTCTCTCTCTTGTCTGTGCCATCTTGGGTGGGTTGTCTTGCATCGTGGCCACTTGTGTAAGGAAGTCTGCATCAGTCAGACATAGTCCTTGCCTAGATATTGTCTGTCCCTAAAAGATGTTGCACGGCTATAAGCAGTACAGCTGTTAGCACATTTAGGTTAGGGCCTTTCTCAGGTCAGGACTTCTGCTCAGTTACCTCTAGCTGGTGCCAAAAGCATTAGGGTTCCTCTGCCTTAACTGCTGTTTGATGAAGACTTACACACCATTTACAGGATTCTTCTTGAGTCCTGAAATGGTCACGTATCCTACCTTTTGAGGTTCTGGTAATTCCAGGGATGCTTATTGGACCATTTCATCTGTGTTGCAGAACAAATAATTTTTGTACAGCTTGAATAAGCTGTAGCCCAGACCAAGATGAATTCCAAGCATGGTAGACAGTAGTAGGCATATGCATAATGTATAGTTTGGAGGCCAGGCTCAAATCTAAATAGAACTGTATGGATCCCTAATGGTAGCATTTGGTCCTTGAATCTGAGCACTGAAGCATCCTTGAGATGAATGCTACAATTTTTAAGATAGCTTTCCAAAATTGTGAGCATATTTGACAAGTTTTAATCTACCTTGAGTTCCCATATAAGGAAGCAGTGAAGTCCATTATTAATGAATCCTAGCAATTAAAATTCTGACTAATTCACTAGAGCCGGATAATCTGGCGATCTAAGCTGTGTTCTACTACAAAAAAATGAGAATAGCAAAGTCTTCATTTAAGGAGAAAACCATGAAATCCAGAATTGTGGCTCCAAATTTTAAATACCTTTGCTTCATTAATTCCAAGAAGACATTCATGTTATAAGTAATACCAACAGAAAAATTGAGCCATAATCATCTTTGATTTCAGCTATGAAATTGAATATAAATGATTAACCATTAAACACACATGCTATTAATGGGTATTTGCTTCCTTTCAAACATTGCCATTTCTACAAGACTTAGCTTTGATCTGGGACTTGAAGAACTCTGCATTCTTTACAGGGCCTCTTCTTAGTTGGGATGTATTCTTGTAGGCATACTAAGATCTCTCCTCATAGTGGTTTCTTCCTCTAGATTAGTGCTCAACACAAAGAGACTTCTAAGTAGGGATGTATTCCTGTAGGCCAAGCCTTGCACAGCAAAGGAACAGATTTCTCAAAACCACCCTGCCTTCCTTTGTGTGAAAAAGTGTTTTCTCTAGTGGGAAATATTTAAAAAGCAATCCTTGCAACACTGGCAGGGCATTGGTGGACAGGCTGGCCTGTTTTCAGCCTGGTCTGCTTTCAGCCTTGTGTACTCTTTGACTGGAAGCTCTGAAATCTCTCCACCAGGCTTGCAAAGTTCCCAGGGCAGGTCATTGCCACACCAGCCCCATGCTTCCAGATTTCCACGGCTTTTTGGGGTGCACTTCTCGCAAACCCCATCCTTTGCCACAGTACCATTCTCTGGAACCCAGTTGAGTCACTGTGTGAAGGAAAACACACAAACTTAGTCTAGAATCAATAGGTAACACAATCGCTGGACGCAGCAACTAGCATCCCAATTTGTAAGCCATTCTAAGTTCAATCCTCCAGTTCTCCAGTAGTGGATCCCAACAGATCTGCCACGTGAACTGGGGGGGGGGGGGGGGGGGCGGCTCTGCTACCTACATTTTGCCCTGCATTCTCACCCCAGTCCACCAGCCCAGTCTCCTCTTCCATCATCCCTTTCTCCCTTTCTCTGACCCGGAAGTCCCAGTGATTGGTTCCTTGAAATCTTGATTCATTAGGGGAAGGTTCACATGAAGTCACATGAGTACATGATTCACTCCTTGTCCCAGGCATCCCCTCTTGGGGAAGTGGAATTAGCAACAAAATAGAAACAGTACCAGTGCTATCCATAATGGTTTTCTTTCTTTCTTTTTCTTTTTCTTTTTTTCATTTTTTTTTCTTTTTTTGGGTTTTTTGAGACAGGGTTTCTCTGTATAGCTCTGGCTGTCCTGGAACTCATGCTGTAGACCAGGCTGGCCGCGAACTCAAAAATCAGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCATGCGCCACCACACCCAGTTCACAATGGTTTTCTTAAAGCCTGTTGCCAACTTATTATTTTTACCAAGCCTAGGGAATATCTTTCAGTGCAGCCTACAGCATAAATAGTTGATAATCTTGTTCCCTTTGAGTTTAAATCCCATCAATATTTACTAGTCATCCTTTGTGTGTTTTGTTTTGTGTTTTCTTTGTTGGTTTGATGTTTTCCTGGTGAATCCATTCTTTTTACTTGCTCTTCTGAAGAAATACCCATCATGTGATATTATGCCTAGTGGGAAATAGACTGGTTGCTTTAGCATTTTGCACTTGAAAAACAAAAGCCACTGTCCACAGGGGAATACCTTCATTAAAGAACTGGAAAAATTAGTTAAGGAAGCTATTCAATTTTGAGAAATTCTTTCTAAGTGCCAGGCATCCTGAAGAAGGGATGGGAAAAGAGAGGGAAAGAGGGAACAGGTCTCAACTCTGTGCTCTGTTTTCCTGTGTAG
Seq C2 exon
AATCTAAGAAGAGGAATACCTCAGGTTCCTTACTTCAGTCTCTATGGAGACCAAGAAGGTGCTTATGAACATCACGGCTCCAGCCTTTTCCCTGAGGGTCCTACTGACTATGTCTTCAGTCATCTTCCACTACACTCTCAGCAGCAAGTACGAGCTCCTATACCCATGGTGCCAGTTGGTGGGATCCAAATGGTTCACTCCTTGCCGCCTGCCCTTTCCGGTTTACATCCTCCACCCACATTGCCTCTGCCCACAGAGGGCTCTGAGGAGAAGAAAGGAGCACCAGGGGAGGCCTTTGCCAAGGATCCCTACATCCTTTCCAGGCGGCATGAGAAACAAGCCCCTCAAGTTTTGCAGTCATCTGGTCTACCTAGTTCTCCCTCCTCCCCACGGCTATTGATGAAACAGAGTACTTCAGAAGACAGCCTAAATTCCACGGAGAGAGAACAGGAGGAAAACATACAGACTTGTACAAAAGCCATTGCCTCACTCCGGATTGCAACAGAAGAGGCAGCTCTGCTTGGGGCTGACCCTCCCACATGGGTACAAGAGTCCCCCCAGAAACCCTTGGAAAGTGCACACGTCAGCATTAGACACTTTGGCGGGCCTGAGCCAGGTCAGCCCTGTACCTCAGCCGCCCACCCTGACTTACATGATGGTGAAAAGGACACTTTTGGTACATCACAGACTGCAGTAGCTCACCCCACGTTTTACAGCAAGAGCAGTGTGGATGAGAAGCGGGTGGACTTTCAGAGCAGCAAGGAATTATCTTTAAGCACAGAGGAAGGCAATGAACCTTCACCAGAAAAGAATCAACTCCATTGATCTGCAATGCATGGACACATTCATTTCCACATTTCCCCCTCCCCTGTTTTGTTTTTGTTTTTCTAGGAATAGAAGTAAACAAGTTGATAGCATGCCTGTCCTAAGTTACAGTAGTTGGCTATTATAAATACTTTTGTTATTTTGAAAACAATTAGGTAAATTAACAAGTCATCTTGAGCCTGACCAAAACAAAATTTGAAATTAACCTATTGGGTCTGGTACTTTGAAAATTGTACAGATGTTTGTGCCTTTTCTTTACTTTGCTTATATTCTTATAAGCATTTTTTAGCAGTAATTTGTACATATTTTAGAATTTGTGTATCTGCTTTGTAATAAATGTAATCTCTTTCCTCTTTTGGACACTTGGATCTAAACGATGTAAAGCAAAGCAGCATCTATATATATGTGAGGTTGCACTAAAACATATTTTTATATGATAAAAACTGAACAGCTTTTATGTACAGCTCTGATTCTGTAATACTAATATTTATTTTATTTCATAAACTGTACATTTTTCTTAATGTTGTGGATTGCTTTTCTATGTGACGCATGGATTTAACTGTTGCGAAACTAGAACGGAAATGTCCATTGTAAGCAAGATATTTAAACTAGAATATCTTATTCTGCACTTATGCATTAGTTACAAAAAAAAGATAAAGAACGTATCAGTCGGTTCTTAACTTGTAAATTCTTTTTGTCTCTTGTTTGCTGGATTGACAATAACTTAAGTGCTGGTTGTGATTTTAAATGGATAGTACCGTAAAGCATTAAAGTAAACAATGTGCTATTGTGAGTTTTTTCAAAGCTTTATAAATCAGTTATAAATAATATTAAAAGTATTTGGTCTTATGTGAACATGTTGATCTATATACTCATCTAAAAATATGGGAAAAACATTCCGCCCCATGTAAATATGTACAAGTGCATCACTGGTACAATTTTCTGTTACTCGGTTGGACACGAGGTTGCCACAGACCTATGCTAGAGTGTCTTTAAAATTAAAGTGAGAAAGCACATGGACTGTGTAGAGCTTGGTTATCGGCCGGCCCGGTGGCTTGGTAGGCAGTGCTGTGCACTGCCCATGGAGAAGACCTGGGCTTAAAAAAATCTTGGTTCTTGCTGCACAGGATAGTGACTGGAACTATGGCTGCAGGGAGGGTTCGCACTTGGACTCGAGGGTTGGGTGTGGAAGTGGGGAAAGGGGATGGAGACCTGCTCCCCAGCTCTTCCCATCAGCCAGTCCACATGGTTACAGGGTTACCATCAGCATTAGGAAATGTCACCTTACCCTTCTGTACAGGGAAAGAGTGTCACTCCTGGCTGTCTCAGGGGGAATGAAGAAGAGAAGCCTTCAAGAGAAAGCAGCTCTTGGTAGGAGGAAGTTTTTTTTGTATATAACCTTCAGAATGGCTTTTGATCAGTGTTGAAGGTGGGAAGAGCCTTTGCAGGTCCAGAAGAGCGGAGCAGAGGGGTACAGCAACATGTGCACACGCATGCACATGTTTGTGCATGCGCACACACAATCTGGGTTATCTTTGTGCTATATAGTGGATTATAATTCTGTGAAACCAAGTTTGTATATTGAATTACATTAAGGAGTGTTCTTTAAAAAGAGAAATAAATATACAATTAAATGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015501:ENSMUST00000015645:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.977 A=NA C2=0.847
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types