GgaINT0090390 @ galGal3
Intron Retention
Gene
ENSGALG00000004934 | CDC25A
Description
NA
Coordinates
chr2:482573-484476:+
Coord C1 exon
chr2:482573-482684
Coord A exon
chr2:482685-483975
Coord C2 exon
chr2:483976-484476
Length
1291 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAGT
5' ss Score
10.75
3' ss Seq
GAACCCATTTCTTTCCCCAGAGC
3' ss Score
8.11
Exon sequences
Seq C1 exon
GTGCCGCTTTGTGAGGGAGCGGGACAGGCTGGGGAATGAGTACCCCAACCTGCATTACCCAGAGCTGTACGTCCTCAAGGGGGGGTACAGAGACTTCTTCCTGCGATGCCGG
Seq A exon
GTAAGTAACACCCTCTGAAACTCCACACCTCTCTCCCAGTACCTGGACCTCCAATCAGACTTCTCCGTGGGGCACGGAGTGTTTTTCCTGGGCTGTTTTTTTCTGCTGTTGCACAGCACAACCCTCACTGAGAGCAGTCAGAACTTGGCAGTGACACTGCCTTCATTTCTCTAAGCCAATTTCGTACCTCAGAACTGCCTTGCTGCCATGGCTGGAAGGCTTTTCCTCCTGTCTCTAGAGTAATATTTGAAACTGTTTTGTCTTTCCTAACAACTAGGAGTTCAAAATATCACATAGAGAAGGAGTTAAAGGCTTTTCTCCTAGTCCTTGCAGGCTGGGCGGAGAGACCTGGCAGTAATTGCTGAATGACACATGGAAACCTCAAGCCTTGTGCTACACTAAAAAAGCAAAATCAAAAAGCTTGAGCTTTGGGAAAACTTGAGCTCTGAGTTTCCAACCTATCCCTTCAAGGAGGAGACCAATAAGTGCCCAGCAGCTCTTCCCATCGTGGTGTTTCTCATTCTGCTTCTGCAGCACTTCAATTGCTATATGCCATTTTTGTCTGTTCTGGTGCTATGAACCATGGCCTGCCTCTCCCTTCAGTCTCTCCCAGAGCCTCGTGCTTTGGAGCATCTCTCAGATTAACCACTCTGCTTTGAGAACTGCTGCAGTTGCAGGCAGATGTGAGATGCTCAGCCTTCCTGCAGCCCGTGCTTGTGGGCCAGGGCAGTGCTGTGTGCTGCTCCCCACATTTCCACACGTGGTTTCTCAGCATCTGTGTTGCTGCTGTTCACAGTGGTTGGTGCTGCTGTGTTTTTGGCCCTGCATGGCTGTGGGTGCCCCGGGATTGTTTTGGCTCTGGGCTGGAGGGCCTCGAGGTGGCAGCATGGAACAGCTGATGGCAGTGTTCCACGTGCTGGGGGCTGGCTGAGCCAGCAGAGAAGCAAGTGTTTTCCAGATCCATGTTACCTCAGGGTGAATGCTGAATATACTTTGCTTGCTTGTGCTACATATTGAAGTCTGCCAAAAAACCTGGGGTGGGAGCTCTGTCTGTGGGGCCGAAAGTCCATTGTTTGGTAGCTCTCCTTCAGAAGTAGCTGTAATCTGAAGATCACTTGGCTTTGCTCATCAATATCTGATGTGTGGCTGCAGCTCAGTAGGGCTCCTGTGTGCTTTGTTCCGGTGGCAGTGGTGTGAGCAGCTGCTGCCAGGCTCTGCTGGCTGTGCTCAGAGCCCGTCGCTCCGTGGCGCAGTAAAATGAAACCAGAAATGAACCCATTTCTTTCCCCAG
Seq C2 exon
AGCTTCTGTGAGCCCCAGAGCTACCGCCCCATGCACCACGAGGACTTTAAAGAGGACTTGAAAAGATTTCGCACCAAGAGCCGAACCTGGGCTGGTGAGAGGAGCAAACGGGAACTGTACAGTCGCTTGAAGAAACTCTGAGGGCCAAAAAAGTGAACAAAGACTGCACCCCATGGCAGGGGGAAAGCTGCAGCCTGCTCCTTGCCGGCAGCTGTCTGGTGTCTGCTCTCCTCATCTCTTGTCCTACTGGGAACGCTGCAGCCACCACTGGAACTGAGCAACCTGGGTGCTGGCTGGGAGCTGACTCCTGGGGCAGTGTGCTGCTCTATGGGGACGGCTTTGCACATCACCACATCCCCCAACTGCCCCACGACCCCCAGGGGTGGAGGAGGCTGCGGTGCCGCGTGTGTGTGGGGCACGGCTGGTGCGAGCAGTGAGGGTCTTTTAGTGCTGGTAGCTTTTAAATGCCTTGTTTTAATTTAAATACAGTCCAATGAAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004934:ENSGALT00000007893:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0058115=Rhodanese=PD(31.8=89.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCCCAACCTGCATTACCCA
R:
CAGGTTGCTCAGTTCCAGTGG
Band lengths:
357-1648
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]