RnoINT0032507 @ rn6
Intron Retention
Gene
ENSRNOG00000020737 | Cdc25a
Description
cell division cycle 25A [Source:RGD Symbol;Acc:621498]
Coordinates
chr8:117969471-117971519:+
Coord C1 exon
chr8:117969471-117969582
Coord A exon
chr8:117969583-117969780
Coord C2 exon
chr8:117969781-117971519
Length
198 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
GTCCTCTCCTATTCCTGTAGTCT
3' ss Score
7.49
Exon sequences
Seq C1 exon
GTGCCGATATGTACGGGAACGAGATAGGCTTGGCAATGAATACCCCAAACTCCATTACCCTGAGCTGTATGTCCTGAAGGGGGGATACAAGGAGTTCTTTTTGAAATGCCAG
Seq A exon
GTGAGATGTCTGTGAGCATGTCTCTACACGCCCAGCTGGACCAATGGGTCGTTTGTGGCTGCTGCCTGCTGGGGTCTGGTCTGGGGATACAATATGCATCTATTACACACCAGACTCCTGTGGAACTCACTGGCACTTGCAGCTGTAGGCAGAGGGTGTCAGTAGGCGTGTCTTGACTGTCCTCTCCTATTCCTGTAG
Seq C2 exon
TCTCACTGTGAACCCCCCAGCTACCGACCGATGCACCATGAAGACTTTAAAGAAGACCTAAAGAAGTTCCGCACCAAGAGCCGGACCTGGGCAGGGGAGAAGAGCAAAAGGGAGATGTACAGTCGCCTGAAGAAGCTTTGAGGCCAAATGGCAGTGACCTGAGCTTCCCTCCGCCCTGTCCCTTTGTCCCTTTGCTGTAGAGCAGTAAGCAAAGGGGCCAGCTATACGGCACCTGGACCCTGGAGAAAAACCTGGGCCTTCCATGCCTTGAACCTCCTACACTCCCAGGTTGGAGCCCAGGGCATCCTGCCGTCACACTCTTCTGTGAGAGTCCTTCCCTGTCAGGACTGTCTGCCAAAGCTGGACAAGCTCGGCACAGGCTGGCACAGGCTCGAGTCTAGTCTGGAACGCCACGTCAGGCTACTCCGACTAAGCATCCCCTGAAGAAGTGCCCAGGCCTCTCATGAGGGGAGAGAAGCCACTGAAGTGCTGCTGGCCAAATACCAAAGATAGGCTGGAAGGGAGAGGTCCTCATGGATGACTCTTTAATTTATTCAGCCTCATCAATTATTTTATTATTGTTTTAATTCCTTTTACTTTTACTTTACTGCTTCAAAGTCAAAATACTGCCATTCTAGGTAGAGTTTTATCATCCTAGGAACTACCTCTACTTTTAATTTAAAAAAAAAAAAATGGGGCAGGGATAAGAAAAAAGGCAAACCTGTTAAGTGTGGGCAGCGCAAGGAACTCAGTCACCCCTAGGAGGCGCTGTAGACTGGTATTGCTGCTATTCAAAGTCAAGGACTGAGATGCTGGTCAGAGCCTGCACCAACCAGATCCAGGCTTGGCTACAGGACATAAGCTAACCTTCCCAGACCTACTTCTGCCCTTTGTGATGTCCTTTGGGGAGAGTCTTGTCTGTACTCCTGGTCCCAGGTCCCCGTGACAGTGACTGGTGTGGGAGTTGCAGGAAGGCACATCAAGCCACCCCCAGGCCAGTACTGGAATGTTGAAGTGTACCCCAAGGTGGGAGTGGGGAGGCATGGAAAAGTGGAGTCCACAGAGTAAGGGAGGAGCATGCCCACTGAATGTCCTTTAGAAAAAAAAAAGTCATTTTATGAGTCAGAGTATCCAATCAGTGTTGGGTGGGCACCTAAGCGTGAGCAGGGGGCGGGAAGCCCGGGCTGTTACAGACGACTGTAGAATTTCTCAGGAGGGCGTAGTAAATTTTGAAGTCAAAAGTTCTGGGTTTATCATGTTTTAATTGAGGGACAGAGTGGTGAAACACATCAGTTACCCCCTAATCTAACCCCGTGGAAGTGAGGCTCTGGGGAATGCCTCCCATCTAAGGAGCTGGCCCGTTTTGATTCTGTCAGTGTCCTCGGGCACCAGCCTCCCTGCCATCTGTGCTCCATTGGGGTCTAGCCAGGTTTTTCTTAGGAAGAGTCTCCCCTCTTAACCTCTGCTTTCTATTCTGGGGGTGGGGAGGGAATCAATGATATTGAAGATGGCTAGTTGCTTTGTTAAGGGTTTGAGTTTGCATTTGGCTATAAAACAAATCTTGTTAAAAATATGTGGAGAGCAAGGGAATGAGCAGCCTCTTCCCTGGTGTGTTGAAGTATGTCCTAGTTGGCCCCTGGTCTGGTTTGTAGAGATTCTGTTAGTTGAATGCCTTCAAGGAGAATGAATGGCTTTCAGATTGTACCAGCTTAGCTAGCATTGTTAACCAGCTGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020737:ENSRNOT00000028141:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0058115=Rhodanese=PD(32.4=92.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTTGGCAATGAATACCCCA
R:
AGCTCAGGTCACTGCCATTTG
Band lengths:
251-449
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]