MmuINT0032730 @ mm10
Intron Retention
Gene
ENSMUSG00000032477 | Cdc25a
Description
cell division cycle 25A [Source:MGI Symbol;Acc:MGI:103198]
Coordinates
chr9:109891745-109893895:+
Coord C1 exon
chr9:109891745-109891856
Coord A exon
chr9:109891857-109892078
Coord C2 exon
chr9:109892079-109893895
Length
222 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
TGTCTCTCCTGTTCCTTTAGTCT
3' ss Score
8.96
Exon sequences
Seq C1 exon
GTGCCGATATGTGAGAGAGAGAGATAGGCTCGGCAATGAGTACCCCAAGCTCCACTACCCTGAGCTGTATGTCCTGAAGGGGGGATACAAGGAGTTCTTTTTGAAGTGCCAG
Seq A exon
GTGAGATGTCTGTGAGCATGTCCCCACGCCCCCATGCTGGGCCATTGGGTCGGTTGTGGCTGCTGCTTGCCGGGGTCTGGGGGCGCACTATGCATCTGCTAAGTGCCAGGCTCCTGCTCACTGGCACCTGCTTGCTGCCTTCCCAGCCTTGCAGCTCTAGGCAGAGGAAGCCAGATGATATGAGGCAGGCGTATCCTGACCGTGTCTCTCCTGTTCCTTTAG
Seq C2 exon
TCTCACTGTGAACCCCCCAGCTACCGGCCAATGCACCATGAAGACTTTAAAGAAGACCTAAAGAAGTTCCGCACCAAGAGCCGGACCTGGGCAGGAGAAAAGAGCAAAAGAGAGATGTACAGTCGCCTGAAGAAGCTCTGAAGCCAAATGGTAGCAGCCTGAGCTTCCCTCTGCCCCGTCCCTTTTCCCTTTGCTGCAGAGCAGTAAGCAAAGGGGCCAGCTGTACGGTACCTGGAGAAAGACCTGGGCCTTCCATTCCTTGGACCTGTCTCCTACACTCCCAGGTTGGAGCCTAGGGCACCCTGCCGTTACACTCTTCTGTTCTGTAAGAGTCCTTCCCTGTCAGGACTGTCTGCCAAAGCTGGACAAGCACAGCACAGACTGGAGTCTGCAACACCGTGTTAGGCTGCTCTCACTGAGCATCCCATGAAGAAGGCCTTATTGGGTAGACCCTGGCCTGTCACGAGGAGAGAAAAGCCGCCCAAGTGCTGCTGGCCAAATACCAAAGATAGGCTGGAAGGGAGGAGAGGGCCTCGTGGATGACTCTTAACTTTAATTTATTCAGCTTCATCAATTATTTTATTATTGTTTTAATTCAAGACTTTTACTTTTCTGCTTCATTAAGTCAAAATACTGCCATTCTAGGTAGAGTTTTATCATCCTAGGAGCTACCTCTACTTTTAATTTAAAAAAAAAAAAAAATGGGGCAGGGATAAGAAAAAGGCAAACTTGTTAAGTTGTGAACAGCGCAAGGAGCTCAGTCACCCCTAGGAGGCGCTGCAGACCAGTATTGCTGCTACTCAAAGTCAAGGACTGAGATGCTGGTAAGAGCCTGCACCAGATCCAGGCTTGGCTACAGGACATAAGCTAACCTTCCCAGACCTACTTCTGCATTTTGCAGTGTTCCTCGGGGAAAGTCTTGTCTCCACTCCTCACCCCACGTCCCCATGACAGTGGCTGGTGTAGGAGTCACAGGAAGGCACTTTAGGCAGCTTCCATCAGGCCAGTACTGGAATGCTGTAGTGTGCCCCAAGGTGGAAGAGGGGGGGCATGAAAGAGTGGAGTCCACAGAGTGAGGGAGGAGCATGCCCACTGAATGTCCTTTTAAAAAAAAAAAAGTCATTTTATGAGTCGGAATATCCAATCAGTGTTGGGTGGGCACCCAAGGGTGAGCAGGGGGGCGGGAAGCCCAGGCTGTTATGTATCCTGGCCTACAGACAACTGTGGAATTTCTCAGGAGGGCGTAGTAAATTTTGAAGTCAAAGGTTCAGAGTTTATCATGTTTTAATTTGAGGGTCAGAGAGTGGTGAATCACATCAGTTACCCCCTAATCTAATCCCATGGAAGTGAGGCTCTCGGAAACACCTCTCGTCTGAGGGGCCAGGCTGCTTTGATTCTGCACAGCCTGTTTTGGTGCCTGCCTGTTGATATCCTTGGACACCAGCCTCTCTGCTATCTTTGCTCCATTGGGGTCTAGCCAGGTTTTTCTTAGGAAGAGTCTCCCCTCTTCCCTCTGCTTTCTATTCTGGGGGCGGGGAGGGAATCAGTGATATTGAAGATGGCTAGTTGCTTTGTTATGGGTTTGAGTTGCATTTGGCTATTAAACAAATCTTGTTTGAAAATATGTGGAGAGCAAGGGAATGAGCAGCCCCTTCCCTGGCGTGTTGAAGTATGTCCCAGTTGGTCCCTGGTCTGGTTTGTAGAGATTCTGTTAGCTGAATGCTTTCCAGGAGAATGGCTTGCAGATTGTACCAGCATAGCTAGCATTGTTAACCAACAGTTGCAGGCTCTGCAAATAAAAGTGATCTTGAACCCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032477:ENSMUST00000094324:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.013
Domain overlap (PFAM):
C1:
PF0058115=Rhodanese=PD(32.4=92.1)
A:
NA
C2:
PF0058115=Rhodanese=PD(3.9=14.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCACTACCCTGAGCTGTA
R:
TCTCCAGGTACCGTACAGCTG
Band lengths:
302-524
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types