GgaINT0091332 @ galGal3
Intron Retention
Gene
ENSGALG00000006112 | F1NDB7_CHICK
Description
NA
Coordinates
chr2:5394358-5397915:+
Coord C1 exon
chr2:5394358-5394486
Coord A exon
chr2:5394487-5397823
Coord C2 exon
chr2:5397824-5397915
Length
3337 bp
Sequences
Splice sites
5' ss Seq
GGCGTAAGT
5' ss Score
9.39
3' ss Seq
GTGACTTTCCCTTGTTACAGATA
3' ss Score
9.95
Exon sequences
Seq C1 exon
GTACACTTTCACTGGCATTTACACTTTTGAGTCATTGATAAAAATATTGGCGAGAGGATTTTGCATGACAGAATTCACCTTCCTTCGAGATCCATGGAACTGGCTGGATTTCAGTGTTATCGTTATGGC
Seq A exon
GTAAGTAGCCCTCCTTTTTATTTTTTGAGACAGTGATGTGCAATAGATGCATATTTTTAAGTTGTCTAGCTGTTTTTGGTTGTTTGTTTTGTTTTGTTTTCACTGAAGTTGTATTGAAAATGAGAAAATGCTGAAGTATTTTAAGATGGTCTTTGTTTTCCTGAGTGGTTTCAAAGCAAGATTTCTCAGTTCCATTCTGTCAATGCAGTGGACTACTTTGGGGAAATTGATTACATTTGAGTTGAACTCCCGGGCCCATGATATTTGACTAGAAGCAAGATTGGAAAAAAAGGTTCAACCCAAACTTAGTTCAAACAGCAGAAAGGATCAGTGAAGTCAGTGGCGGTATGCCGGGATCAGGGCTAATATTCTTGGTAGTGTTCAGCAGAAGGAAAACATAAAGACATGTAAAATCTATGTAGACTTCACTGGGAAGACTCCCATTTATTTTAGTAGGTCAGCCCAAGGCCAGATCTTTGTATCTCTTACTACATTCCTATGGATTTGGCCAAACTGACGTCTGGCCATTGTGATAAGTATTTCAAAATATGCAAGGCAGATGGGGAGGAGCTTTGGGATGCCAGCACAGACTAGATATTTTTCTCAAGCAGTGTAATTCTGCAGTGTTTAGAGGCTGGACAGAACAATCCAGAATGTCACTTCTCCTCTGACCTGTCCATTAATATGTGAAGTAGGGAGTTCATCTGCAGGGCTCTGAGTTCATCATGGCCTTCAGTGCATTGGTTCCCTGTATTCTAGAGGAAGAAGGCTTTTGACAGTGAGGTAGAAATGAGCAGAGTGAAAAAGGGCAAGATGAGCAACAACTTGCAGCCCTGACAGTGCATTTGCTCTACCTCATCTCAACTTGGGAGGAAGTTGGGTTGTCGTCCCAACCAGCTCTGCCAAAATACTCTGGGAATGTTTTTTCTAAACTGAAATTTGTGTCTGAGCAGTCAGCACAGACAAGATCTGGATATCCCTTTCAAGCTTATAGGACTGGAAAGAAACAATTTTAGATTAGAAAAGAAGGAATGGGAGTTTTGGTACAGAAAGGAAAGAATATATACTCACTATTTGCAACTGATTCCTTGAGCCTATAGGCAGCAGTGAAAGAGCTAATGGTGACTGCAGTGTGATCTTCATAAGTACAATGAAACTTCCTTCCCAAGTATGCAACGGATAGTGCAAAGCATTGGATGTTGGTCTCTATTCTGATAAGATTTACCCTTCATGTAAACCAATTTGCAAGTAATTTAAAGTAAGACTGATTATACAGGTTGCTATCTTTGCTTGTAGCTAGTGGTATTTCTGTATCTGGAAACAAAACCGTGGGATGGAGAGCTTGGTGAAGGGCCATGAGATTTACAGGGTCCCTCTGATCTAACAGGAAATATGATTATTTCATTGGTGGGTGTACAGTGAAATGACCATCAGCTGCTGTAGAGTTACTGCAGAATAAGTTCCTACTTCCTTATTTTTGGGACAGAAATAGCACAGTTTGGGTCATAGAGAGTAGCTTTTAACTTTTTTTAAGCTCTTTAGAGATCAGTGGTGCAAGAGGTTTTCACAGCTCTTCTCCCACCGTGTGCTAACAGACACAGCCATGCCTTGTGGGGGCCATGGATGGGTTCAGGAAAATTTAGGAGACTGCCCCTGATTAGATTACTGTTTATCAGACAAGCGATGACTTTCTAGAACAAGAAAGGAATAGGTTGCTGTAGCTCTGGATTGGAAAATATCCTGCCAAATGCTTAAGGTCTATAAACAATTCCCTAGCTAACTGGAAAACTTGGAATGGGAATTCCGACTGCTTCTTGCTCCCCATGACAGAGGCACTGAGCTGCTGCAATTTCATCCAAGAAACTGATAAAATCACTACTAGTTGACTAATGTGAACAGGCAGCAGAAGTATTTGTCTAATATGCTTGTTCACATATTATTAGTGTGTTTGTACAAATCTCTGGTCTGCAGAACCATGCTTCCATTCCATTGCTTCTCCCCTAATTACATTTTACACCCTTGCATGCTGCAGAAGAGTCTGGGAGAGAAGTGCTGGGTATGACCGGGTAGGAATGACCAGACAGGTAAATGCCAGGCTCCCCTGTAAAACTATGAAGAGGAGGAGCAATACTGCTCTTCCAGAACGTAATGTAGGTTAGAAGATATGGAAAGGATGCTTTGTCCTCCCGCAGAGTCCTTTGCACAGAACTCACTTAGGCAGTCTTTGTCAGATAGCCAAGTGAGTTTTATCCTCAGCACATGAAAACAAATGCCTCAAAGAAGTAGAGTAGGTAAATGTAAATAGCCATACAATAGGGTCCAGAAGATACAATGATGACTATGGTTTTACTGCATACCCTTTTGGTGGAAATAATCTTGCAAACTCTGAAAAAAAACTACTCATTCTATAGCTGACCCTCCTGGGAGTGTTTTGCTCTGCTGCTGTATGGGTCTCCCTGATGACCGAAATAGACACAGCAGTGAATAGCTGGGATTGGTGTTTTAATCATAAATAGGTTCAGTAGGTTTTCAGTTACATTCATTGCAAGTCTTCTTCCAGCAGCCAAAGGGCATGGATTTGATGTTCAAAATAAAGTTTTAAGCATCTCTTGAAACCAGCATCTGCTTTAACACACAGTACAGCGCTGTACAGTAAATAACCCAGCAGAAATATTTGCACTGATGTTTCCCCATGTTGTTCTGTTCTGCAGAAGTCATTACGTGAAAATTACTTGAGTACTCAAAGCTTTTATTTTGTATTTTTTAAGAGCAGCAAAGCAATTCTTAATGTTTCCTATATTGCAAAGAATCTTGGTTAAACTACATGATGGTAAAATCTTCATAATATTTGTTGCTGAACAGTCTGATAACAAAGTTCAACCACAGTTCTAAAGAATTGATGCCTGTTAGATCAGTTTAGTAGTTCAAGAAACATTTGCAATAATGTGTGCTATGAAAAACCTGGGACAAATGGCATCAAAGAGCAACCAGAAAAGTGGAGTCACCTCTCATTCGGATGCGTTCGCTCCTGCTATGTGTGAATGCATTCTTCATTCAGACAAATCTCGTGCTCTATTGAATAATTCCAAATAACTGTGACTTAATTCTACAGGTATGTAGGAGAATTTGTGAATGTAGGCAGTGTTTCACCTCTTCGGACTTTCAGGGTATTGAGAGCTTTAAAAACTATTTCAGTAATCCCAGGTAAGAAGCCTCGATCCTTCTGTTTTGGCTCTCAGCTACAAGTGATTCTTTCTCTGTCTCTCTTTGTCCCCTTGACTGTTGTTTTTTTGCTGGTGTTTTGTCATTGTCTGTGTGTGACTTTCCCTTGTTACAG
Seq C2 exon
ATACATAACTGAATTTGTGGACCTGGGCAATGTCTCAGCCTTGCGAACGTTCAGAGTACTGCGGGCGCTGAAAACAATCTCAGTCATTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006112:ENSGALT00000009918:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(16.9=100)
A:
NA
C2:
PF0052026=Ion_trans=FE(14.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]