GgaINT0091339 @ galGal3
Intron Retention
Gene
ENSGALG00000006112 | F1NDB7_CHICK
Description
NA
Coordinates
chr2:5440383-5450041:+
Coord C1 exon
chr2:5440383-5440784
Coord A exon
chr2:5440785-5449908
Coord C2 exon
chr2:5449909-5450041
Length
9124 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
TGGTGTGTTCATTTCAACAGACC
3' ss Score
8.85
Exon sequences
Seq C1 exon
ACTCTCCTTGGCATTAGTTATGGTCCCAGTGCAAACTTGGTGAAGCGCAGAACCAGCCACGGAAGCATATTCAGTTTCCGACTCCGTGGTAGAGACACTGGCTCCGAAACAGATTTTGCCGATGATGAGATCAGCACCGCTGGGGAAAATGAAAGCCACCGGGGCTCTCTCTTAATTCCAAGATCTGGGAGACGTCCGAGCATTCAAAGTCAAGTGAGCCATAGTTCTCACCCTACTACTCCCAACTACACCCAGACGGGCAAAAGGAACAGCTCAGTGGATTGCAATGGTGTGGTTTCCCTGATAGGAGGAGGCACCGGGGCACTCAACCCAGACCCTACTTCTCCTGCAGGGTTACTGCTCCCCCCATTTATTATGGAAAAACCTGGGACAGGCGATCTG
Seq A exon
GTGAGTACTTTATAACTTTTGTATGTGATTCATGCTCTCATTTCCTTCTGAATGTTGTTGGAGTTTGCTGTAATTTATTTACATAGTATGCAGTCTGCAGCGAGAAACTTCCCACCATCCTAGGCAGGATGGGAAGACAACAGGCTGACTCACATAGTGACATGTGTCTGGTGCCACATAAGTTCACAACTTCGGCTGAGACTTGCCCTTCAGAGCTGACTGGAAGAAACAGGAGTTGGACTCGGTGGTCCTTATGGGTCCCTTCCAACTCAGGATATTCTGTGATGCTGTGAAAGGACTAAATACTGGGATTCATACACGTTTTCTTTTCTTGTAGGGGTATTTTTCAAGTTGGTTCCTTTGCCACTTGAATATCTGCCATTGTGTGTTGGAGAAAAATAATGCTTTTAAAATGATTCTGTATTCAGCGTTATCATCTTGAGACTGCGTTTTCTCACTCTGTTTTTTATCTGTACACATCTAACTTCTGCTCTTCTCTATAGCTGCTTGTGGGGGGCTGTTCTTACTGTCCACAAGTAGTTCCCAGAAAGTTCTAGCATCCAGTTAGGACAGATGAGCAGATGATCAGAAGATTTCCAGGATCTTTGTTGCAAAGCACCGTTATTGCAAAATATTTCTTAAGGCTGGAAGTAAAACTATTAAGACTGATACTGTTAAGACATAAGATATGAATTCACTTGGAAATGTATGGGATGCTGTTTTGAAAATAGCTTCTTCATAGGCAGAGCAATGATGACCGGTTGTCATATGTCAGATACGGTGGGAATTCATCTCTTCTAATGTAGATATCTACATTGGAGCTCATCTCTCTCAATGATCTTTAAAGCAATGAAAGTCTAGTCACTATGGTGAATGTGGGCAGGATTTATTTCATCTTAGAGATCTAAAATGCATTGGAATAATCTCTGTCCCTAAAAGCATCTATTTCTGTTCTCTGAAAACAATAAGAGCCCGGAGTGAAAAACTCTTTATTGCAAAGGTCTTAACTTAGGTGAGATGAAACCCACCTAGAGTAACCACATATCAAAAATGGATTACGTTGAGAGGGTGAAAAGCAAGTGATGTTCTAATGTGCATTAGTCAAGGTATTTCCTGAAAAGAAAGGCAAATGAGATAGATCCCAGCTGTGGTGTCAGATTATCAGTAAATTGAGATGTAGCTTTCTTTTCGCTGTAGAGAAGGCAGCTTCTTCCCTTTCAAGCGTTGGTCTGAATTTTTTACTCACCTATCTGAGCACTCCTTGTAGCCCTTCAATTAGAGTGTCATGCTATAAATGCAAGAAGGGGCTGTTCTGTGCATGGGAAGCTATGGGAAGCATGGTGGTATGAGAATTATTTGCTTTGTTGACAATTCTGGGGCCATTGCTGCTTCTTCAGATGTTCACACTCATTTAGGACTTCGGTACTCCCTTTTGCACTCTTTGCAAGCAAGAGAGACCAATCCTGAGAGCGGTCTCTAGACTACAGAGCAATAGACAGGCTGAAGATGGTGGGCTTCTATTGAGGTTATGCTTGCAGCATAACAAGCTGCATGTTAAAGAAATTGTGGAAGAAGGAGGTTGTGCATCTTTAAAAAAAAACAATCTGAATTAAAGTAGAAAGGCTGAAGTAGATGAGCAGTGGACGTCCCCTTTTCTCTGTAAGACAAGCAGCTGTGCATCCTGCTGAGGCTCTCGTAGCTGTCAGAAAGCTCAACAAACCATGTGAGCACTCAAGCTTTTACGGCAAAAAATGGTATTTTACAGGATTGGGCCCTGAGGTGACAGGGAGACTTTGAGCTCTTCTGGCATTTCTTTTCGTTTGCCAGCTTCCTGCCTTTTGAAAAGGGATGTTGAAAATGAAATGGGCTTAGTGTGCAAGCTCACTAGGCAGTTCCCTGGTAGTCTAGGAAATAACACCCAGACACTATAGTAACAGATGCTTGGTCAGTGATGCAATGTGAAGGATGTTGTGTCTCCTGCAAAACTGGTTTGGTATCTAATCTAGCCAGAAAATGTGAGCTGGAGTTAAAAGCTAATTGGAAAGAAGCCCACTGCTGTACAAATGCATTTGCTACAGAAACCATGAGAGCTGGGCACATATGTGCAGCTGCAGCTGTGGGGCACAGGCAGAAGGAAAGAGCAAATCGAAAACCTCGGTATGTTCAGGGATAACACCTCTGGGGCTCTGTGTTGGATTATTTTTGCTATCTTCTTGTTAAACTTTTGAAGTTAAGTTTGTTCCTGCTTAGTAGCTCTGGCTCCTTTTTATTTTCTCTTGGGGGAGGTAGAAGGAAGATGTTACAGGGTGAAGCTGAAGTTAGCTTGTTAACCCTACCAGCCCCACCGCTGTTATTTGTTTCATATCAGTGTAAACCCATGGTGAGACAGGACCCACTTCTGCTATATATGCTCCATCTTCCATGAACAAGAAAACAAAGAACCAGTTCTTTTCATGGAAAGGCATCACTTACGTATTGCGTCCAACCTGCAAGACATTTCTACAATTTTAGCCTGTTCATTCTTAGCATCATTCAGCCTTGAATTTACCCTAGGCAGTGCAGTTGGGACTGGGATGAACAGCTTTTGTGCCTTTATGCCATTGCCCTGTTCCAGCTGAGGGCTGCTTGCCAGTGGGACTTGCTGTGGTGGCAGCTGATGGGACATGACAACATCCACACTGCTCATACCAAATTTTGGGAGAAGTTACCCTGAGAAGTTGTGGCTGCCCCATCCCTGGAGGTGTTCAGGGCCAGGCTGGATGGGACCCTGGGCAACCTGATCTAGTGACTGATGTAGTGATGGGTAGCCCTACCTGGGGCAGGGAGGCTGGAACTAGATGGTCTTTGAGATCCCTTCCAACCCAAGCCATTCTATGATTCTCTGATTCTGTGTAAGTCAAATATGACTTTGAAATGCTCTTCATTTTATGCTGGCCATGGTTATTGGCACGGCTAGTTGTGAGTCTGCTTCCATGAGAAACAAATGTTCTTACATTTTCTGTCTCCTCCATCCCTAAATACACCTACTGAAGCAGGAGGAAATTCATGTAATCTCAGTGGATGGTGCTTAGACCATTCAGTCCAGTTATGAAGGGTAGTTTGAGTGGTCGACAGTCTTTCTGGTCATGGAGGATGTGGTCCATGCAGAATGGCATCCATCCAGTAGAGTTTCTCAGGAGCTGTCCTTGCTGGCACCAAGGGTTGTGCTGCAGTGTTCAAGCTAGAAAGGTCATATGAAGAGTAAAGAAGTCTAATGTAGAAGTATGATCTGCAGACACTCTCCAGAAGCTCTGGGTCAAGCAGTCTGACTGGATATGAAGAGCAAGAGGCGCTCAGGATGGAGGTCTGCAGGGTGCTGGTGGCAGGAAACATGTGCTAAGTCCGAATTATTCTCCTGGAGATCTCCATGATCCTCAGAGCACTGAATCAGGACTGGGCCTGATTTCCCACCAGCTTTCTTCAAATGGTGCAGCTGCTGATTTCAGCAGGCTTAGCCTGGCATAAATAGGCTGAAAGCTGCACCTGGTTTTAAGTCCTATTTTTTTTTTTTTCTCCTTGCTTTGAGACTGATACATTTTGAAAATAATCCATCCTTTACTGCTGATAACAATTGTTGGTCTGGAAGTTTGAACTTTCTTTGTTCTTAGAGAAAGTCTGAGTGTTATTTAAGCAACTTCGGGGCACTGTAAAGGCTAAAGTTTCCATGTGCCTGTCTAGAATTCATTTGTAGTTAAGTATTACTCTGTTGTGCCTTGGTGTGTGCAGAATATAGAATAGCACCTCCCTTCACAAGATACTGATCCATTTGGACAGAATTGGATTAAGTTAATGAGCTGTTATTGGGAGCTCAGTTTATCCATGGGATCTGATGAAGATAAGGAAAGCACCTGTGAATTTTTTGAAGGCTAAAAAATACAGAGGATACCATCCACTCATTAGAAGCAGAGCAGGGCCACCCAAGACATGATTTTGGAATGAACAGTAGTGGGAAGCTTGGGGCTACCTGGGATCTCCCAACCTTTGCTGAATTTCCTCTTCATCACAGTTTTTGTTCTCCTTTAGTAAAATAAAAATCTGGGTATTGATTCTTGATGGGGGGCAAACTGCTTGGTAAGTAAGCCCTGAGTGAAGGCAAGGCTGTTTATTGAGGTGCCAAACTGAGGATTTAGGAGCTTATCTTCAGACTGAATGTTTGTTCTTTTTTTTGTTGTTGTTGTTTTAACACAAAGAGAAGAGACCTTGGCTTTTGTTATTTCTAAGCAGAAAGCTGTTTTGCTGACCACGTGGCTTTAAGGTTTTTTTTTGTTGTTGTTGACCTTAAATTCCCCCCAAGGTAGAATTTATTTATTTATTTATTTTTCCCCTCCTTGCCTTTGCCCCAGGACTGTTGAAAAGGCGAAGTGTTAGCAGTTTTGTGTTCAGAAAAAGGTCAACACAATAAGTCATCCAAACACTGCCACCAAGAAGTCATATGGCTGGAAGCTCGTCTGTTGTCTACTGGGACTGCTGTCATCATGGCTCCAGTTCCTGTTCACTTCAAACTTTACTTTAGCACATCCCAAAATAAGACCACACCTGTGGTAAATTGTTGAGATTTAACATAAATATTGCAAGCTTCTCCAGCTTACTGTGCATCTCTTTAAATAATCAAGTATTCACAAAATTAAATGCCTTTTTTTTTTTTTTTAAGGCTGTGTGCTCTTATGACCACTACCAATCTCATTAAATACATATATTTTTTGTGCCTTTTTGGGTCCATTGTTCATGGTGTGCCCTGTCCACCTCTTTTATGCTTGAAAACATTTTTACTGTACAAGGAAAATTAAAGCTGTCCCAGTTCCCAAATGTGATCTTTAAAATTCTGCCACATATAAGCCCATCTTTGCATAGCGATTTTGACATAGCTCAGAGCAGTGGATGCTCAGAATAAAATAATTCTGCAGTGTTATGCATCCTCATTTACATGTAAATTACTGAATAGCATATTTGTCCCTATAGAATTTAGCTAATCCAAAGGAGAAACATTTCCAGTCAATCAAGGAGCAACACAAATAATCTTGTCTTGACAGAGATGCCTGTATTTAACTCCATTGTGATTTCTCATCTGGACGCTATGGAGACTCCCTGCATAACTCTAGAGACCCTTGTTATTTTGCTTTATTTCCATAGACATATAAGTACCATGACCCTTTATGCCTGTGTTTACTCTCTGTATGATGCTAATAGCTTTTATACTGCTGTGCTTTTCCAGTTCCTGGAACTGCTTTGTACCTCAGACTGCAAAAACTTCCAGTTCCTTGTATGAGGATTAGCTATCTCACTACTAAGATAGGTAATAAAACCTGCTCATGGATCTGTTCTTAACAAAGAACAAGAGCTCATGAACTTCCCCAGGTAACTTCAGTAATTTGGAAGAACTCATCTGCATGGAAACTTTCTTCTCTGGAAAATATACTTCATGATACACTGCAAGCTGATCAAATGTGCCTGTTGTCCCTCGTCCTGTCACTGGGCACCACTGAAAAGAGCCCCATCCACTTGACTCCTGCCCATTTGAAATGTATAAGCATTTTTTTTCTCCAGGTGGAACAGCCCCAGGTCTCTCAGCCTTTCCTCATCAGGGAAGTGCTCCAAGCCTTCATCATCTTTGTGGCCCTACACTGGACTATCTCCAGCAGTTCCTTGTCTTTCTTGAATTGAGGAGCCCACAGCTGGACACAGTACTCCAGATATGACCTCACCACAGGATCACCTCTTGCCCCGCTGGCCACACTCTATGTAATGGACTCCAGGATCCCATTGACCTTTTTGGCCATGGGGGCAAACTGCTGGCTCGTGGCCAACCTGTTGTCCACCAGGAGTCTCAGGACCTTCTCCACAGGGCTTTTCAGCAAGTCAAGCTCTAAACCTGTACTGATGCATGCGGTTATTCCTCCCCGGGTGTAGGACTCTACACTTGCCCTTGTTGAACCTCATCAGGTTCCTCTCCACTCAACTCATCAGGTTCAGCCCGGACTCTTCACATATCCTGGCTTAGCTGAATCCTGCAATAAGAGGAATGAATCTGAATGTTTTCTCTCTAACTCTGTAGTGCTACAGTGAATACTCTTTGCACCTGTGAATAAAGGTGGCTTTCAGATAAAGGCCATCAGCCCATGAATTTTGCAAAAGCAGTTCTGCACGCATCAGTGGGAATATATTATCTTACTTGACAGACAAAAAAAATGAAAACTTCTGGGGATGAGGTTGTATAAAGAAGTGCTATTGATATATGCTAAATTCTGGGTCAGAAGCAATGAGAAGATGGTACAGTTTTAAAAGAGCTAGATGATCCATTGGAATTTGAGAATTTCTTATACTTCCTTCTATAGACAGAGGGAACTGGCAGAAGAGTTGCTTTGCTGTTTGGCATTTTTGCTTTTCTTTGTTTTGACTTTTTAAAGCTTATTCTACCTTCTTTTTCTTTCTTTCTTTCTTTTTTTTTTTCCCCTTTAGTTTATTCTACTTAAAATATGTTCCTCTTGTGGCACTTTTTCTCCTAGTTTTTTTTTTTTTTCAGTCCTACATATGTAGGTTGCTCCAAAAGTAATGCCTCCTACTCCTTATTTCCATGGAAATTACAATCGCTACAAAGAGCACAATAGTACTTTGATAGAGCAAATTTTCAGCTACAAAACACTATATTTAAAGACAGCCACCACCAATAGCCAATTTGTGCAGGTGATCTAGCTGATTGCAACTCTCTTCATTTCATGGTGTGGCAACTGTGCATGGCTGTCTGGAACTTGGCTTGTCTTTTACATTCCTCTTGCCACAGCTGAAACATGCCACCTCACTGTGCTCACATCCACTGTTTGATCTTTATAAACATTCATCAAGCAGCCACCTATCAGTGGGTGCAATTTCTTCCACATGAAGGAATTCAGTGACACACCTTTGCTTCATACACATTTCCATGTCAGGTGCCCTTCTGTCAGGCTACCCCTCTGCTGCCATCTGTTGAATGGTAACAAAATGTAACAGAATATTGGCGAGAAGGTTCAACCTCTACCACCATCCCACCGACATCCGCCTCTGTTGTCATGGGCCAACATCATAAAATAGGAGTCATTATTTTCAGAGCAACCCTCGTACTTCCAATGTTCTCCAAATTGGTGTGAAAGTTCACGCAGTTTGGTAAATGCTCTCTTCATTAAAACATTTGTTGTTTCTTTGTTTATTTTACATTTCTGAGGTGAAGGAAATAAAGTGAACTAATGCATTTGAATCATCATTCCTGATTTCCCCAGCCTCTAAACCAAGCATAGAGCAATTTCTTGTTCTGCTACACTCAAGTGGGATTCTTTTTGAATAGATTCTGATTGCACCTCTACTTTGGATACAACTGCATCAGTAACTCAATGGGCAATGATACAATTGTTTGAACAAAAGAGAACATTTTAGAAAAAAAGAAAGCCATTTTGAAGCATTAGTACCTTTCTGACTTAGCTATTGTTTTAAGTGATTGCTTTAAACATTACTCTCCTTGCAGGAATTGGTATTTTTATCTGCGGTTCTTTAAAGTGACCCGCTAACCATATCCCAGATGACTATTTTCAGTGTCAACAAGTGGCTGAGCGTCCTTGTCCTTTGCAGCCATCTGACAAAGGGACCTACTCTACTCTGAAGAGATCACATTCCAGAAAGACAGCTCAGAGAGCATCAGTGCTCTTTTACCCCCATTGTCACAAAATTGCCTGCCTTGAAGAACAGTTTTGTTGGAGGAAACCCAGCCATGGGCAGCAGAGTCAAGGAGCTGTTGCCTACAGCGTGTCTTGATTAGGTGCTACTTGAGGCACTTGGGGCTATTTCAGATCCAAAGAATCTGAGAAGATGTAGAATCCAGAAGATTAAATCAGGTTCCCATATCTCATTTAGATACGTAGGGGCAAAAGCATCTACTCCTACTTTCATATTCTTAGGGATTTCTCCACCTTTCACATTTTCTTGAGCTGTCTTTTGGGAACCATTGGGACCCATCTATCTACAGTGCATCTCTTTTGCCTGTATTCAGTGTCTTACAGCCTGTATGCTTGGAGGAGCAGGACAGAACTTTTAAAACATTAATTTGAGGAATTATCTTTACTGGGTGATCTTTTGGAGAGGACAGAAGTGAACTTGGCTTTCCCAGATCCTTACAGCCCAAAAATCCTTTCTTTTTCCTCTGGCAGAGCTAGAGGAGTAGATCAAGTAGAACTTATCTGCATAATGTGGAAAGTCGTAATAATGAAAGTCTTATCATCTTGCTCTTGTGAGCTGAAAATCTTAAGTATTAAATACAGTATGCCTACAATTGTGCTGTGTTTCTTATTGACTTCAGAAACCTAAGCCTTCAAAAAGCATAAAACTAACTTAAAATGAAATGTTAAATAAAATTTGGCAGTTCTGTTTATCTTCTGGTACTGGAGTTGTTTGTGGGTTGTTGTTTTTTTTTAAGCTTTTTCTTGAAAACAAGAGACCAAAACAGTTTGTTTTTTTTATGATTTTGTTTTTTTTTAGGAGGGGGGAGGGGGAAAAGGAAGCAGAAATTCTCCCCTAATTACAGAGCTTCAGAATCCATGACACCAAAGATCACCAGAATGACAGTATGTTCCTCAGATCTGGCAGTGTTTCAGACCAAGAAAAACCATGTATTGAGGATTAAGTTGGCTTGGCATGATATCAGAGCCCTGTAATGGAGCTGTTACCAACACTCCTTTTTCCTCTTCTAGCAGTATAATTAAACAGTTAACACGTTTCAGAAATAATGGGGTAATTAATGTAATTAAACAGGGCCTCTTTCACTAGAAAAGAGGGTGGTAAAGCAGCACTGCTGTTTCTCTGGTGTCAGAAATGCCCCTTTATTTCCGTCTGCATCTCTCACCTGTTTTGACAGAGGTAAAGAGCAAGGCCAAGTTTTTAAAATTGCTCAAAGTGCCATTTTCAAAAGCCATACCCCAGCAGCACACGTCTAATTGGGAAACTGGTGAGCTTTGGACTTAGAAAAAAAGACTGCTTAAACAGTTTTGAAAACACTGCCCCATATCTGCCTTGCATTCTTTTGCCCCAGTTTTACTCAGCTGACCTGGTGTGTTCATTTCAACAG
Seq C2 exon
ACCTCTCCCTCAGATGAGGCCAGCAAGAAGCAGCTTTTAATGCCCCATCGCCCATCGGTGGACCACTCAGATGAGCCCTTCCAGAGACAGAGGGCAGTGAGTGCTGTCAGCATCATCACCAGTGCCCTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006112:ENSGALT00000009918:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.701 A=NA C2=0.600
Domain overlap (PFAM):
C1:
PF119333=DUF3451=FE(60.7=100)
A:
NA
C2:
PF119333=DUF3451=PD(16.9=82.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]