GgaINT0092700 @ galGal3
Intron Retention
Gene
ENSGALG00000007588 | F1N890_CHICK
Description
NA
Coordinates
chr2:16200518-16203532:-
Coord C1 exon
chr2:16203420-16203532
Coord A exon
chr2:16200634-16203419
Coord C2 exon
chr2:16200518-16200633
Length
2786 bp
Sequences
Splice sites
5' ss Seq
CTGGTACAT
5' ss Score
4.22
3' ss Seq
TATATTACTGTGGACTCCAGGTG
3' ss Score
5.83
Exon sequences
Seq C1 exon
GTTCACCTATGAAATTGCTCCAGTGTTTGTACTTTTGGAATATGTCACGCTACGGAAAATGAGAGAGATGGTTGGCTGGCCAGGGGGCTGTGGCGATGGGATATTTTCACCTG
Seq A exon
GTACATGATATTTCAAGCTTGCTTCGGGACTATGCTATGTGACATCCCCTGTAGTTAAAGAGTAAACATAATTAAATATGCATGTTCACGAGGACGCTTGCTAATAACCACTAGTGGCCTCTTTGAGATAAAGCGTTGCATGTTTTTGAATTTCAGGGATGTGATTAAGAGGGTCTGTTTGAGCAAATTGCACTGTGTTATGAGCAGCTGTAATGGCACATGGGAAACATAATCAGAAGAGACATTGGCCTTGCCCCCACTTTTTGTAGAGTACATGAAACAGAAAGAACGTTGTATTAGTACAGTGAGAAGAAATGCTGCCCATCACTGAAGGGGGAATTGGAGCGAGGAGGGAAAAAGAGAACATCCCTTGAAGTAAATTCCGTGGTTAGTTAGGGTCCCACCAACAGTGTAGTAAGCAGTTAGCTTTCCATGTGTGAGCTGGCCGTGGTGCTCAGCGGGGACCCCGGAGGGCTCCTTCCTCTGAGTGCCTGGAGGCTCAAACCTGCTTCTGTCTGGGCACGTCAGTAAGGCAAAAATGCCTGTGGTGGCTGTGGAGAAGTCATTGACACTGACACACTGTATTGTCAAGGCTTTCATTTTAATCATTCCACTTAGTGTTTTGATTTATACTTTTTGTCACTGAAACTAAAAATTTTAGCCCATCTATCTCCCCAAATTACAAAAAATTGGAAGAATTTACATTGGGCACAGCATCTTGGCATGTCAAAAGAGAACAGACTGATAGTCAGTGGGGTAGGAGCTCTTCTGGAAAGAAAGCTCAGAGACATAATGGAGGGGAAAAGAGCATTTGGACTACCAAGCAAAGGAAAGACCTTGTGGATAACAGCCTGGGCTGCTGGGTCTCCATGCACAAAAGTTCCAGCAGGGCTCATCAGCAACTGGCTGCTGGCATCTGACTGCCCATGTGAGAGCTGCTGCAGGAGTCTGGGGTTGGTTCTTTCTGCAGAGGTGGAGGAAGAGATGAGTTTACATTACTTCTTGTTGAGAGCTTCTAGTTATTGTACACTGCACATGCTGAACACAGAGGCCTGACAAGGGTCTTCAGATTTTGTTGGTGTGTTTTGTTGGCTGCAATTAATGGCGAGTGTAAACAGAGCCACAAAATTAAAGGCAGAATGCAGACATATTGTTCATAAGTTTTTAGGATTAAAATACTAGATAAAAAATACTAGGAAAACCCAGCATTAAAGTAACTTAACATTTTGGTCTGAATTCTTTTGATGCTGAGCGCAGTGACTTTGGACAAGATAGGCCAAATTTCTTCCACCTGGAAATGTTAGTTCACCTAAATCATCAACAGTAGCTGCTGCATGATGTTTGCTTATTTTAGAGATGGGAACCTGAATATTTTCTCTTAACCTCTCCCTGTGTCATGTTCCTTCACTTGTTAAAAAAAAAGGTGTAGAAGCATGCTCATGCCTCCCAGGGTACTGTAAGGGGAGGAGGAAGCAGCCCCCAACCTGCTCTGAGCCCTGTGCCCACAGTGCCATTCTCATGTGTCAGGGTCAACTGTTGTCACACCAGGGCTGAGGACAGGGAGAGCCTACAGCAGGGACCCTGGGTAGAAAAGAAGGCAACACCCTGTACTTCGTTACAGCAATTCCCATTTCTTCAGTGGAGAGAGTGGATGTGTGTGTGCATGGTGCATGTCATCCCAGCTGCCATAGCCTAGCTACCTTTGGGATGAGCCGAGCTGTCCCCTGGCAGTGCTTACTTGTGCTCCTCCATCTTTAGATGGATGAAAGTTAGGAAGCAATTGGACCTGTTCATTTAAAAACCTAAAACCGTGATCAGTATACACCTTTTTGTTTTATAAATATATGTGCATAAACATAAATATACAATCATCTGTATGTATATATGTGTATGCTATATATGCAGGCTAAAGCTGTTGGGTTTTATTTACTTGTTTTTGCATGTGGTTGTATGTGTACACGTGTGAAAGTGCTCAAACTCTGCCTCAGGTTCTGCATTATATTCCCATAGTGCTCATGCAGTGTTAAAGTGCAGCCAGACACGGTTTGGCTGTAGACGCAGAGGCTCAGTAACAGTCTTAGAAATGCAAAATGAAGAGCATGTTTGTAATTTGTGCATTGATGATTGAAATACGGGAATGAAACGCTGTAGACCTGTCATCTGATGCTTACATGGGTATTTTAAAGCAGTGTACATGGGTGATTATAACAGTAGTGCTAGGGAAAGGTAACCTTTTCCCCTCACTCCCACTGGAGGACAGATAAAAAGAATTTATTAGAATCACCCTTTTTCCCTTCTCCTCCCTCTCCCCCTCCAGTTACCCAGAAGACAGTGTCTGTTGGTACACAGTGTGGGTTTCCTCAGAGCCAGGGTGTGAAGCATCACCCTGCTTCAGGAGGGAAAGCACAGGTCAGGTTGCGCTCAGAAGCCACTCATGAAGTTGCCTTGTTGGCATCCATGGCATGGGGCGGGGGTAATGCATAGATGGCCCATAGGTAACACTAGGGACTAAAGGAAAAATGGTGACAAAAAAAAAGAAGATAAAAGGAAACCTCAATCATTTTTTTTTTCATTAGTGTTATATGCGTAAAGTGTTCCCCGTGTGCAGTAGACCTGTTATTGTACAGCCCAGCTGTGAGGAGCATCAGGACAAAGAATGCACGTTTCTGACACGGGGCAGAAACATTAACAGGAGAGCTAGGAAAACCATAGCAAGACTTGTCGTTTATACTGCAATGATATTACACTGCATAGAAAAAGTAACAGTATATTACTGTGGACTCCAG
Seq C2 exon
GTGGTGCCATATCTAACATGTATGCTATGTTGATTGCACGTTTCAAGATGTTCCCAGAAGTTAAAGAAAAAGGAATGGCAGCTATTCCCAGACTGGTTGCCTTCACATCTGAACAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007588:ENSGALT00000012268:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0028214=Pyridoxal_deC=FE(10.2=100)
A:
NA
C2:
PF0028214=Pyridoxal_deC=FE(10.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]