RnoINT0063576 @ rn6
Intron Retention
Gene
ENSRNOG00000018200 | Gad2
Description
glutamate decarboxylase 2 [Source:RGD Symbol;Acc:2653]
Coordinates
chr17:89178906-89185372:+
Coord C1 exon
chr17:89178906-89179018
Coord A exon
chr17:89179019-89185256
Coord C2 exon
chr17:89185257-89185372
Length
6238 bp
Sequences
Splice sites
5' ss Seq
CTGGTATAT
5' ss Score
3.72
3' ss Seq
ACTGCTTCTGTGCCCTCTAGGTG
3' ss Score
11.42
Exon sequences
Seq C1 exon
GTTTACCTATGAGATCGCCCCTGTATTTGTACTACTGGAATATGTGACACTAAAGAAAATGAGGGAAATCATTGGCTGGCCAGGAGGCTCTGGCGATGGAATCTTTTCTCCTG
Seq A exon
GTATATACATTTCATTTTTTCTGTTTTGTTCTTCTGGTATGCTATGTTATAAACATCTATTCTGTGTTTCTGATTAAGTCACTTAAGCTGTGTTTATGAAAATAATGAGTATGGCTTAGTCCATTGAACACATCTTGGAACTTACTAATCTCATGCTTAAATACCAATTATCTGTGCTCAACCGAGTACAGTCAGACGTGATATCACCTCATACTTCTCCATGACCCTGCATATAAGAGGTATAGATAGTGCTGGTCAAAAGAATAATTGCCAGAAAGGAAATTCACCCTTGCTGCATTCCTCAGAATGAGTGAAATGAAAGCATCATTTAACACAACACTCGGTGTGTAAATGTATATACCGAGCTATATTTCCCCAGAAAAGCCCATTCCCTCTTTTCTCTAGTCTCTGGAATAATGAACAGGGAAGTGGATTTAGACTCATCCAAGGAGGGCATCGAGTGCATGGAGAGGTGGTTCCTTAGAGCTAGAAGAGAGTGCTGATTTGTTTGAGGTATTTTCTCTCCTCTTTATCACACCACAAGATGTTTCCTATTTTGCTTCTGATTACCAGTCACTGCCTGTGCTAAGCTCCCTTATTTACACCTCTCCCAGCCCAGAGAATCAACCTGAAACAAAATGCTGTGACCTTGACTTGATTCCTAGATGAAAAGGGAGTTAGGAAGGCAATGGAAAAAGTCACTGACCCATGGAAAAGTAGCCTGATGTCAGAGTGATACCTAATCAGTGAGAGGAAGCCAGTCTTCAGCAAGCTGTGATAGGTGGGTTGAACAGGAAAGGCCAGAGTTACACCTGCAGCTGTGAGCCAGGCACAGCCTGGCACAGCCAGTCAGACTGGATTCAGAGCCCTCTGAAGCAAGTCTGCAAAGGAAGTGAGAGGTGAGAGGGTCTGAAGAAGAAACAATGACCAAGCAGTAGTGGCCTCAAGGACAAGACTTGCTTGTGTCTGATAAACCATCTCACCTCTGTTGTTTTGTGTTTTTAAGTACATAGCATGTTTTTTTCAGATGCTAAAGGGAAATGGAACAGAAAATTAGCCTTAAAAAAAAACACACACACTCATTGAACACTAGTGGTGATGGATTCTTTCATTTTCTAGGCAATTTAGTACTTATTCTCCCTTCCTGCTAAGTTTGTGGTTTGTCTTTATTGTCCAAGATTGATGCTTAGAACATATTTTCATGAAGAACTAGGTACAGTTACAAGGGTTATGATGTCAACATCATTTCTACCTTATTCATTCAAGAGAATATTCATATAAGGATAGTGTTGATTGGACGTTTAAGTTGTCCCTGAGATGTACCAAGAACAACATGGTTCAGTTTTAATAGCTCACAGAAGTAGGAAATCTTTGCTAGTCTAAAGAGGGGGCATGCCTTAATTATCTAGCCTGTCTTGGAACCTAAATGCCCCAGATAACACACACCCCAAGAAATCCTGCTTGATGGTTCTGCTAGGTTCTGTCTGACACAGTGGATGGTGGCAAACCAGTGGTTGGAGGCTATGAAGCTTCTTCCTTTGAGCCTGAAGATGCATATGCTCTAACCATGGTGTAAAAGCCATAGATGTAGCGTTACATTGTAATATAAATATTCCAAAGTCAGTCAGAGGGGACAGCAACAGAAAACAATGCAGATCTGTCCTTGCTCAACTTCCTACAAGAAGAGTGAATGTATATAGCATCCTAATTTGCTAGTAGAAGTAGCCTTGCTCCTGGGCTACAGAGTCAAATGATCCAAGGGACAGGAGTAGAGAAAGTAGGCTCACAGGCACGTCCTAGTTTCCTCTGGTCCTGGGAATAATTGTAAGACTTGGGTCTTTGACGTGGACAAAATGCTTAGCTTATTTTGACTGTTGTCCAGTTCTGCTCATCCTTACCACAAACACCCAGGAACTTGGTGCTTCCTGAAATTGCCTCACGACTCCTGAAAGAATTCTCTACATGCAATTTACCTACACCTGAGAATCAGACAGCACTCCAATCTTTGGCAGGCTATAAAGGATAAGGACTGAGGGGGGGGGGGAAAGGCCCAACTTCATCTCAGATCTTTTCCTACTATAATCATTAGAGGTTGTAGGGCATCTCTTCTGATCTTCATGTGGTCTTGCACAAATCCCTTCATCATCCTGAGAGCTGCAAAGCCTTTAGCTGGAGGATGACTGAGATGCAAAATGAGGAGCTGGAGACCAGGATTGAAACCTTCTTGAATAATTACACATGAAGAGTGCTTTCTTTGTTTATATTCCCTTTTCTTTTCTAATCCCCATCCCCCCACTACCACCTACCACCCACCACCTACCGCCCACCACCCCATCCCCACCAGACTGAGAAATGTAGCAAGAGCAGCTGTTCTCAACTAGGGAGCCAGTATTGCCCTCCCAAAAGAGGGCAATGTCTGTGGATATTTTGGGTTGTCATAGCTTGGGAGAAAATGCTGTTGACAACTGGAATCCATGACTGAGGCTAACTACCCAACATTACTTCCGACAACACTCTTTAAGAAGTTCTCTAGCTCAGAATACCAGTGAGCGCTAAGACGGAGAAATCAGAAGCTAGAGTGAGCCCTGCTCAATAGCTTTCCATTGAGTACAGCATCACACTGTCTCCCACCTGGGTATCTGATCGGAACATACTGGACCTGTTTTCTACTGTCCTGAGTCTCTAGGGCCTAACAAGGTAGCAACTGCCTACATTCTGACTGTAGAGATGCCAAGGGCTGGTTGATGGCTTTGTACCAAGTGCCCTGCCTGTATCAGAGTGCAGGGCTCATAAGGCAAAGGTCATAGCCCTGTATGGACTCTTCAACTTGGCAAAGCCTGCCTGATCCTCAACTAGAAGAAAAGGCTGATCAAACCATCTGTGGAATAGTCTTAAGAGTTTCATTCTTAGATTGGGCAGAGAGGAAACACTTGGAGTTCACTCTGCCTTCTAGTCCCGTGTCCGCTATGCGTGCCTAGTCAGTGCCTTCATATTTCCTGGAATATGAAGCAAAATTCCTAAGATTCTGAACAGTCCTGCAGAAAGTTCCATTGCTTGTGAAGTGAGACCCTCCTTACGCAGCAGAGTAAAACTTGATCATGTGAAGTCTTGACAGTCTTGAGGAAATACAAGAAATACAACTCTACATGGAACTGAAATCAGCAGCAGCATTGCATTCGTGAGTGCAATTGTATCTCAGGGATCTGTTTGAGAGAAAGGGCCTTTTAAGAGGAATCAACAGAGGATGAGGCGATGAATGTGGATGTTCTATAGGAACCATTAGCAGGATGCAGAGTAAAGGGCAGCATATTGGTCTCAATTCAAGGACAAGACATTGCTGAAAATGAAAAGAAATAGTTATTTGCCACCATGATAGTACAAGAATTTTACAGGCCTAGCTATACTTATAAACTAGAGAGAAAGGAAAGAAAAAAATCTCTTTTTAGAAATCTCTTCAAGTGGGCATAGTGCTACATACACGAATCCTAGCATTTGGAAGGCTAAGACAAAAGTATCATGAGTTCAAAGCCAGCCTGTGCTATATGATAAGACTTTTAAAAAGAAGATTTATTTATTTACTTTATGTGAGTACACTGAGCTGTCTTCAGACACACCAGCAGAGGGCATCGGATCTCATTACAGATGGTTGTGAGCCACCAGGTGGTTGCTGGGAATTGAACTCAGAACCTCTGGAAGAGCAGTCATGCTCTTAACTGTGGAGGAGCCATCTCTCCAGCCCATGATAAGACTTTTAAAAAGAACTCCCGATCAGAGTGAAATAAATGAAAATTCCCATTGAACTTTCTCTCTCCCCCTCTCACTCCCACTCTTCCTCTCTCTTCCTCCCTCTCTGTTCCCCTTCCTCTCTGTCTCCTCCCCTCCTCTCCCTCTCCTTCTGCATATCTCTGTTTCTCTGTTGCTATGTCTGTCTGTCTCTCCAGGGTCTCTTTGAAGTCCTAACTGTTTTGGTACTCACTATGTAGCCCATACTGGCTTTGAGTGCATGCACCGCCACACCCAGCATTTAAAGTGCTTTCCTCACTGTAGTTGGGGCCCCAGGTGCTTTCCTGAACCCTCTTAGCTGTATCTTAGATTCTGAAAATAGACTTTCAAGGTCGGTGACTTTTCAATTTTCCCAGTCATGACCCCTTTTTTCCTGGGAAGTTTTCAGTCTACCTGGATTTCTAGACATATAAAATAATCACACATATAAAATTATATATAAATAAATTATGTATATAAAGTATATATAATTATTGTAAAATTGTTTTAAATTTTCTATGTATGATACCTTTGGACTCATTAAAGATGAAAATGAATTTGCAAAATAATGAGATAAATGTTTAGTTTATTAAAAATTGTCAAGCCTTAGGTGGTTACTTGATACTGGGCTACGTAAAGATGTCACCATTTTTAGAGTTACTCCTTATTTTTATTTTATAAGGGTCAATACATTATAATGCCACATTGCATCCATATTCAATATCAAATGGCAGAAGTGTATTTAGGGCCATTTTAGGAATCATTGAAAATTTTGTTCGAGACCTAAACCAATATTCATTCATCAGTTATTTATGAACTCATATCAACAACTCAAACAGCAGCTTTCAAATCAAACATTCTAACACAACACCATCCAGATACATTGGTATGTACCAGCTAAGTCAAATGATGGAAAAATACTAAATGTTTGTTTTCTATGATTAAGCCATTAAGTTTCTGTAACAGGAGAAAAAGCATTGCAACTCATAACATTCAATAATCTTGTAACTGACACTTTAGGCAGCATTGACATTGCATGCCTTGATGGGGAGAACAAAGTGAGCATGATGTGTGTTTAGAACCAAGGTTTCAGTGATGTCATGTGATGCGACATGAACTGTTGAACACTGCTAGAAACATCCCAGACTTAGTATATGGCTGATTTTGAAGTAATTTTCGGTTGTTGTATATTCAGAAACATTTTACTGTTTGCAACTTTGCAGACTCTTCTCTCCACCAAACTCTGTTACATAATCCCATATTGGGCTGTGACCCACAGTTCAAGAAATCATTCTAGGAACTCAAGAAGGATGACCAAAATGCGAATGCTTCACTCCTTCTTTAAAAGGGGAGCAAGAATACCCTTGGGAGGGGATATGGAGGCAAAGTTTAGAACAGAGACTGAAGGAACTCCCATTCAGAACCTGCCCCACATGTGGCCCATACATATACAGCCACCCAATTAGATAAGATGGATGAAGCAAAGAAGTGCAGGCTGACAGGAACCGGATGTAGATCCCTCCTGAGAGACACAGCCAGAATACAGCAAATACAGAGGTGAATGCCAGCAGCAAACCACTGAACTGAGATCGGGACCCCCGTTGAAGGAATCAGAGAAAGGTCTGGAAGAGCTTGAAGGGGCTCGAGACCTCATTCTAGGAACTCAAGAAGGATGACCAAAATGCGAATGCTTCACTCCTTCTTTAAAAGGGGAGCAAGAATACCCTTGGGAGGGGATATGGAGGCAAAGTTTAGAACAGAGACTGAAGGAACTCCCATTCAGAACCTGCCCCACATGTGGCCCATACATATACAGCCACCCAATTAGATAAGATGGATGAAGCAAAGAAGTGCAGGCTGACAGGAACCGGATGTAGATCCCTCCTGAGAGACACAGCCAGAATACAGCAAATACAGAGGTGAATGCCAGCAGCAAACCACTGAACTGAGATCGGGACCCCCGTTGAAGGAATCAGAGAAAGGTCTGGAAGAGCTTGAAGGGGCTCGAGACCTCATATGAACAACAATGCCAAGCAACCAGAGCTTCCAGGGACTAAGCCACTACCTAAAGACTATACATGGACTGACCCTGGACTCTGACCTCATAGGTAGCAATGAATAGCCTAGTAAGAGCACCAGTGGAAGGGGAAGCCCTTGGTCCTGCCAAGACTGAACCCCCAGTGAACGTGATTGTTGGGGGGAAGGTGGTAATGGGGGTAGGATGGGGAGAGAAAGCCCATGTAGAAGGGGAGGGGGAGGGGTTAGGGGATGTTGGCCGGGAAACCGGGAAGGGGAATAGTAATCGAAATGTAAATAAGAAATACTCAAGTTAATAAAGATAAAAAAAGAAAAAAAGAAAAGATGAAAAAAAAAAGAAAGAAAGAAACCATTCTAGGTCCGTGGAAATAAAGAATGCTGCTTGCATGAGAAGTGTTGACAGAGAATGGAAGGCTGTAACTGCTTCTGTGCCCTCTAG
Seq C2 exon
GTGGTGCCATCTCCAACATGTACGCCATGCTCATTGCCCGCTATAAGATGTTTCCAGAAGTCAAGGAAAAGGGGATGGCGGCGGTGCCCAGGCTCATCGCATTCACGTCAGAGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018200:ENSRNOT00000024901:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0028214=Pyridoxal_deC=FE(10.2=100)
A:
NA
C2:
PF0028214=Pyridoxal_deC=FE(10.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]