MmuINT0067138 @ mm9
Intron Retention
Gene
ENSMUSG00000026787 | Gad2
Description
glutamic acid decarboxylase 2 [Source:MGI Symbol;Acc:MGI:95634]
Coordinates
chr2:22485468-22490565:+
Coord C1 exon
chr2:22485468-22485580
Coord A exon
chr2:22485581-22490449
Coord C2 exon
chr2:22490450-22490565
Length
4869 bp
Sequences
Splice sites
5' ss Seq
CTGGTATAT
5' ss Score
3.72
3' ss Seq
ACTGTTTTTGTGCCCTCTAGGTG
3' ss Score
11.86
Exon sequences
Seq C1 exon
GTTCACCTATGAGATCGCCCCTGTATTTGTGCTGCTAGAATATGTTACACTAAAGAAAATGAGAGAAATCATTGGCTGGCCCGGGGGCTCTGGCGATGGAATCTTTTCTCCTG
Seq A exon
GTATATATATTTCATTTTTTTCCTCTGTTTTGTTCTTCTGGTATGCTATGTTATAAACATCTATTCTGTGTTTATGAGCAGGTCACTTAAGCTGCATTTATGAAAATAATGAGTGTGGCTTAGTCCATTGAACACACTTTGGAGTTTCCTAATCCCATGCTTAAATGCCAGTTACTTGTGCTCAGCAGAATATAGTCTAACATGATATCGCCCTGTACTTCTACCATGACCATGCATATAACATGTATGGATAGTGCTGTTCAAAAGAATACTAATAAGTAAATTCACCCTTGCTGCATTTCTCGGAATGGGTGAAATGAAAGCATCAATTAACACAACACTCAGTGTGCGAAGGTGTGTACCGAGCTACATTCCCTCCGGAGAGCCCATTCCCTCTTTTCTCTAGTCCCTGGAAAAATGAGCAGGGAAGTGGATTTAGACTAATTTCAAGGAGGGCAAGGAGTGTGTGGAAAGGTGGTTTCTTAGAGCTAGAAGAAAATTCTGATTTCTTTGAGGTATTTTCTCTCCTCTTTACCATGCCACCCTATCTTTTCCATTTTGCCTTTGATTACCAGCCACTGCATGCTAAAGCTCTGTTATTTACACTTCTCCAAGCCCAGAAAATCAACATGAAGCAAAATGCTGTGATCTTGACTTGATTCCTAGATGAAAAGGTAAGGCAAAGGAATAAGTCACTGAGCCATGGAAAAGAAGCCTAGTGTCAGAGCAGAGCGGTACCTAACCAGTGAGAGGAAGCCAGTCTTCAGTAAGCTGTTATGGATGGGTGGCAAAAGAGAGACCAGAGTTACCCCTGCAGCTACCAGGCACAGCCAGACACAGCCGGGCTGGATTCAGATCCCTCTTAAGCAAGCCTGCAAAGGCAGTGAGAGATGAGAGGGCCTGAAGATGAAACAATGACCAAGCAGCAGTGACCTCAGGACAAGACTTATATACGTCTGCCTAACCATCTCACCATGTTGTTTCATGTACTTAAGTACATAGCATGTTTTTTTCAGATTCTAAAGGGAAAAGTGTTAGTTAAATGGAACAGAAAATTAGCCTTTAAAAGCAGTCATTGAACACTAGTTGTGATGGATTCTTTCATTTTCTAGGCAATTTAGTACTTATTCTCCTTTCCTGCTAAGTTTGTGGATTTGTCTTTATTGTCTGATATTGATGCTTAGAACATATTTTCATGTAGAACTAGGTACAGTTACGAGGGTTACAATGTCAACATCATTTCTACCTTATTCATTCTCTTACAGGGTTGATTGTAGGATTGAGTTGTTCTTAAGATGTACCAAGAGCAACATCATGGTTCAGTTTTCATAGCTCACAGAAGTAGGAATCTATTGACTATGAAATTTTTACTAGTCTAAATAGGGGACATGCCTAATTATCTAGCTTGTCTTGGCACCTACCTATATGACCCAGAAAACATACACCCCAAGAAATCCTCATTGTTGGTTCTGCTAGGTTCTGTATGACATAATGGATGGTGGCAAATCAGTGGAAGCTATGGAGCTTCTTCCTTTGAGTCTGAAGACTCATATGTTCTAACCATGGTGTAAAAGCCATAGATGTAGTGTTATATTGTAATATATAATATATATAATATATTCCAAAGTTGGAGAGGAGAGCAACAGAAAACAATGTAGGTCTGTTTCCGATCAACTTCCTACAAGAAGAGTGATGGTATATAGCATCCTTAGTTGCTAGTAAAAGTTGTACTAGGTAACAGCAAGCCTTGCTCCTAGATTAAGGAGTTGAATGATTCAAGGAACAGGAACAGAAAAAGTAGGTTCACACGCGAGTCTTGGTTTCCTCTGGTCCTGGGAATCAATCTTCAGAGTTGGATCTTTGACTCGGACACAATGCTTAATTTGTTTCGACTGTTGTTCAGTTCTGTTCATCCACACCACAAACACCCAGGAACTTGATCCTTTCCGAAATTGCCTCATGATTCCTGGAAGAATTCTGTATATGAGCTTTACCTACACTTGCAGAGAGCACTCTAATCTTTGGCAGGTCAAAAAGGATAAGGCCTGAGGGAGAAAAGGCCTGCCTTAGTCTCGGTTCTTTTCCTAATGTAATCATTAGAGGCTGTAGGACTTGGGCATCTCTTTTCATCTTCATGTAGTTTTGCACAAATCCCATCATCATCCTCAGAGCTACAAAGCCTTTTAGCTGTAGGATGACAGAGATGGGAAATGAGGAGCAAGAGACCAGGATTGAAAGCTTCTTGAATAATTACACATGAAGAGTGCTTTCTTTGTTTATATTCCCCTTCCTTCTCTAACCCTCCATCCCCCACCACCACCCACCACCCTCCACTCACCAACCAACCCCCACCAGACTGAGAAATGTATCGAGAGCATCAGTTCTCAACTAGGGAGCCAGTATTGCCCTCCCAAAAGAACAACTGGAATGTATTGATATTTTGGGTTGTTAGCGGCTTGAGAGAAAACACTGTTCTCAACTGGAATCCATGAATGAGGCTAACTACCCAACATTACTTAAGGCAATCCTCTTTAAGGAATTCTGCAGCTCAACATATCAGTGAATGCTAAGACTGAGAAATCATAAGCTAGAGTGAAACTTGCTCAAAAGCTTTCCTTTGAGTTCAGCATCACACAGTCTGTCCTGGGCATCTGATCCAAACATACTTGATCTGTTTTCTACTATCCTGAATCTCTAGGACCTAACAGGGTAGCAACTGCCTGCATTCTGACTGTACAGATGCCAATGGCTGGTTGGTGGCTTTGTACCCAGTGCCCTGCCTGTATTAGAGCCCAGGGCTCATAAGGCAAAGGTCCTCATAAGGCCCTGCATAGGCTCTTCAACTTGGCAGAGCCTGCCTGATCCTCAACTAGAAGAAAGGACTGATCAGACCATCCGTGAAGTAATCCCAAGAGTTTCGTTCTTGGAGTGGGGCAGAGAGAGAACACTTTGCCTTCTGGTTTCATCTAAGCCAGCCTATTCAGTGCCTTCATAGTTCCTAGAGAGCAAAAGTTCTAAGGTTCTGAAGAGTTCTGCAGAAAGTTTCATTGCTTGTGAAGTGAGACCCTTCTTACAGAGCAGAGTAAAACTTAGTCATATAAAACCTTGACAGTCTTGGAGAAATACAAGAAATATAATTCTACATGTAGCTGAAGTCAGCAGCATTTCATTAATGAATGCAATTGTATCTCAGGACTATCTCTGAGAGAAAGAACTTTTAGACGGAATCAACAGAGGATGGGGAGATGGGTGTGGATGTTTATCCCACATCCTACAGGAACCATTAGCAGGCTGCAGAATAAAGAGTAGCTTACCTGTCTCAATCCAAGGTCAAGACATTGCTGGAAATGAAAAGAAATAACTATTTGCCACCATCATAATATAAGGATTTTACAGGCCTAACATTGAGTGGCTATACACATAAACTAGAGAGAAAAGAAAGAAAAAAATCTTTTTTTCAAAAGTCTCTTCTAGGTGAATATAGTGGTACATACATGAATCTCAACATTTGCAAGGCTGAGACAGAAGAATCATGAGTTCAAAGCCAGCCTGTGCTATATGATAAGACTTTTATTCCCCTTGAAGTCTCTCTCCCTGCTCCCTCTCCTTCTTTGTCTCCCTCTCTGTCTTTCTGTCTCTCCAGGGTGTCTGTAGTTCTGGCTGTTGTGGTACTCACTGTGTAGCCCAGACCCACCTTGAGTGCGAGCACCACCACACTCAGCATGTAAAGTGCTTCTCTTACTGTAGTTGAGGCCCAGTTTGCTTTCCTGATCCCTCTTAGCTGTATCTTTAATCTGAGAATAGACTTTATAGGAGCTAGAAGGGTTTCCCTGGAAGTTAGGCCAGTGCTTCCTCCATTTTCCTGCTCGTGACTCCTTTTTTACCTGCGAAGTTTGTAGTCTACCTGGGTGGCTAGACATATAAATAATCATACATATAAAACATTCACTGATAATAAGTCTTAAACCTTATTTTAAATTCTTTATGTATGATACCTTTGGACTTATTAAAGACAAACATGAATTTGCAAAATAATGAGATAAATATGTTTAGTTTGCAGAAATAATCAAACCTTAGGTGTTTACTTGATACTACACCATGCAAAGGTGTCACCACTTTTAGAGTTACTCCTTATTTTGATTTTATAATAATCAGTGCATTATAATGCCACATTGCATCCATATTCAATATCAAATGGCAGAAATATATTTAGGGTCATTTTAGGAATCGTTGAAAATTTTGTCTGAGTTCAAAACCAATATTCATTCATCAGTTATTTATGAACTCATGTCAGCAACTCAAACAGCAACTTTAAAATCAAACATTCTAATATAATACCATCCAAATATGTACCAGTTAAGCCAAATAATGGAGAAATAGTAATCTTTGTTTTCTATAATTAAGCCATTAAATTTCTGTAACAGCAGACATTTTGTATGTACAGTAAAATGCATTGCTACTCATAACATACAATAATCTCATAACTGACATTTTAGGCAGCATTGGCATTGCATGCCATGATGCAGAGGGCAAAGTGAGCATGATGTGTGTTTAGAACCAAGGTTACAGTGGCATTGTGTGATGTGACATGAACTGTTGAACACTGTCAGAAACATCCCAGATATGGATGATATATGGTTGATTTTGAAATAATTTTTGGTTCTGGTGTGTTCAGAAACATTTTACTGTTCACGACTTTTCAGACTCTTCTCCCCACCAAATTAAGTTATATGCTCTCATGTTGGGCTGTGACCCACGGTTCAAGCAATTGACCTATTCTCTAGGTCAGTGGAAATCCCAAGTGCTGCTTGCATGAGAAGTGTTTGTTGATAGAGAATGGGAAACAGTAACTGTTTTTGTGCCCTCTAG
Seq C2 exon
GTGGCGCCATCTCCAACATGTATGCCATGCTCATTGCCCGCTATAAGATGTTTCCAGAAGTCAAGGAGAAGGGGATGGCAGCAGTGCCCAGGCTCATCGCGTTCACATCAGAGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026787-Gad2:NM_008078:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0028214=Pyridoxal_deC=FE(10.2=100)
A:
NA
C2:
PF0028214=Pyridoxal_deC=FE(10.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: