GgaINT0093622 @ galGal4
Intron Retention
Gene
ENSGALG00000009728 | SLC25A13
Description
calcium-binding mitochondrial carrier protein Aralar2 [Source:RefSeq peptide;Acc:NP_001012967]
Coordinates
chr2:24292237-24292929:-
Coord C1 exon
chr2:24292845-24292929
Coord A exon
chr2:24292396-24292844
Coord C2 exon
chr2:24292237-24292395
Length
449 bp
Sequences
Splice sites
5' ss Seq
GAGGTTAGT
5' ss Score
7.15
3' ss Seq
AGCTTGATCTGTATTTGCAGCTG
3' ss Score
7.02
Exon sequences
Seq C1 exon
AAAGCTCCAGGTGATGTGTCTCGACCAGTCCTCATCCAGATTGCAGAATCAGCGTACAGGTTCGCCCTTGGTTCAGTTGCTGGAG
Seq A exon
GTTAGTCATGGCTGAGCAAAGGAGTATTCATCTCCACTGCTTTTCCTCTCATACTTCTTCCCCTTTCCCACTTCTTTACCTTCTTTGTGGAAAACTTTCCCATCTTTCCCTTGAAATCCCTTTCTAATCAGTGGCATGACTAAGATGGCAGTGGAGTAGGTCATCTGGTCTACAGTAGTTTTGGAATTTATGAGCAATTGTAGTTTGCAGGTGGTATTTCTACTTAATTTGTCACCAAAGCAGTTTCAGAAGAATCAGGTTAATAATGAAATAGAGTCAAGAAGTGCTTTTGGTTGAAATTATATGTGGTAGTTAGTTGTATCCAGAACATAATATGGAGAAAAAAGATACGTCTGAGCATTGAGATATAGATGTGGAAGATGATAGTTGCAATCAAACACCACAAATGCAAAATCATTGTTTTCATATAGCTTGATCTGTATTTGCAG
Seq C2 exon
CTGTTGGAGCCACTGCAGTCTACCCAATTGATTTGGTAAAAACTCGTATGCAAAACCAGCGCTCTACAGGCTCTTTTGTGGGAGAACTTATGTATAAAAACAGCTTTGATTGCTTCAAGAAAGTGCTTCGTTATGAAGGTTTCTTTGGGCTTTATAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009728:ENSGALT00000015833:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=PU(14.3=48.3)
A:
NA
C2:
PF0015322=Mito_carr=FE(54.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGCTCCAGGTGATGTGTCT
R:
AAAGCCCAAAGAAACCTTCATAACG
Band lengths:
238-687
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]