HsaINT0151642 @ hg19
Intron Retention
Gene
ENSG00000004864 | SLC25A13
Description
solute carrier family 25, member 13 (citrin) [Source:HGNC Symbol;Acc:10983]
Coordinates
chr7:95813589-95814323:-
Coord C1 exon
chr7:95814239-95814323
Coord A exon
chr7:95813748-95814238
Coord C2 exon
chr7:95813589-95813747
Length
491 bp
Sequences
Splice sites
5' ss Seq
GAGGTTAGT
5' ss Score
7.15
3' ss Seq
ATGATATTGTTTAATTTTAGCTG
3' ss Score
7.34
Exon sequences
Seq C1 exon
AAGGCCTCAGGTGATTCAGCTCGACCAGTTCTTCTACAAGTTGCAGAGTCGGCCTACAGGTTTGGTCTGGGTTCTGTTGCTGGAG
Seq A exon
GTTAGTCATGGATGAGAGAAAAATTTTCACTTTTGTTATTCCTATTCTCTTTTCTCTGATTTTCCATCTTGAAATGTTAAAGGACAAAGTCTTCTCTAGTCTTTCCCAATGCCAGTTATCAGTTTCTACCTGTGAGGTAGGGCAAGAGTAAAGGGAACTCTTTTCCCATACCTGCATGTGATCAGGGACTTACAAGTGGCATTTTCCTCTATCTACAGATCAGGCCTTCCAAAGACAGGTTACTAATGAGGTTGGGCTGTAGCAATGTGCCTTAATTTAAAATATCTATGACATCCTTTTATTAGGGGATACTTGAATGAAAACCCTCAATTGTTTATTAAAGATATAAGAAAGGTAGTACTGTTTTAAAATCTGTATTTAAAATTCAAAACACATTTCTTTTCTCAGTCTTGTCCTTGACTTTAACTACCTTCTTCTTTCTTCTGACCTATCTTACTTTCTTCTGAGATAATGATATTGTTTAATTTTAG
Seq C2 exon
CTGTTGGAGCCACTGCTGTGTATCCTATCGATCTTGTAAAAACTCGAATGCAGAACCAACGATCAACTGGCTCTTTTGTGGGAGAACTCATGTATAAAAACAGCTTTGACTGTTTTAAGAAAGTGCTACGCTATGAAGGCTTCTTTGGACTGTATAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000004864-SLC25A13:NM_014251:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=PU(14.3=48.3)
A:
NA
C2:
PF0015322=Mito_carr=FE(54.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGCCTCAGGTGATTCAGCT
R:
ACAGTCCAAAGAAGCCTTCATAGC
Band lengths:
238-729
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)