RnoINT0136819 @ rn6
Intron Retention
Gene
ENSRNOG00000009957 | Slc25a13
Description
solute carrier family 25 member 13 [Source:RGD Symbol;Acc:1565889]
Coordinates
chr4:31646100-31646770:-
Coord C1 exon
chr4:31646683-31646770
Coord A exon
chr4:31646259-31646682
Coord C2 exon
chr4:31646100-31646258
Length
424 bp
Sequences
Splice sites
5' ss Seq
GAGGTTAGT
5' ss Score
7.15
3' ss Seq
TTGCTCTCCCTTCATTCCAGCGG
3' ss Score
8.78
Exon sequences
Seq C1 exon
CAGAAGGCCTCGGGTGATGCTGCTCGGCCCTTTCTTCTACAGCTGGCAGAGTCGGCCTACAGGTTTGGACTGGGTTCTATTGCTGGAG
Seq A exon
GTTAGTCATGGGCGAGCATCGCTTTTGTTGATCCTTTGGTTTTCTTTTTTTCCCCCTGATTTTCCACCTCCTGCTTTCGGTGGTTGTTCCCCAAGTCAGCTATCAACCTGTATCTATTAGGTGGGACCAGAGCTGAGGGGTCTTTTTCTACACTTGCACATGATCAGAATCCTACAAGTGATAATTTTCGATCCCTTCTGTGAGGTTAGCCGCTCCTGATAAGCTGTTAATTTAAACTCTAGTGATATCCTTTTTTGTAAAGGGACATTGGGATAAAAGTTAAAAGAGTATAAAAAGGTAATTCAGTAGATCTATGCATCAAAAATACTTCTGTTTTCAGTCCTCTCTTAGATTTTCACCCGCCTATGTCTTTCACCCACATCACCTCAGTTCTGGCTGAGATGTTGCTCTCCCTTCATTCCAG
Seq C2 exon
CGGTCGGAGCTACTGCCGTGTATCCCATCGATCTTGTGAAGACTCGAATGCAGAACCAGCGATCAACCGGCTCTTTTGTGGGAGAGCTCATGTACAAAAACAGCTTTGACTGTTTTAAGAAAGTGCTCCGCTACGAGGGCTTCTTTGGACTGTACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009957:ENSRNOT00000013817:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=PU(14.3=46.7)
A:
NA
C2:
PF0015322=Mito_carr=FE(54.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAAGGCCTCGGGTGATG
R:
TCTGTACAGTCCAAAGAAGCCC
Band lengths:
246-670
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]