MmuINT0145471 @ mm10
Intron Retention
Gene
ENSMUSG00000015112 | Slc25a13
Description
solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13 [Source:MGI Symbol;Acc:MGI:1354721]
Coordinates
chr6:6109181-6110024:-
Coord C1 exon
chr6:6109937-6110024
Coord A exon
chr6:6109340-6109936
Coord C2 exon
chr6:6109181-6109339
Length
597 bp
Sequences
Splice sites
5' ss Seq
GAGGTCAGT
5' ss Score
7.7
3' ss Seq
CTGGTATCCCTTCATTTCAGCTG
3' ss Score
7.48
Exon sequences
Seq C1 exon
CAGAAGGCCTCGGGTGATGCTGCTCGGCCCTTTCTTCTGCAGCTCGCAGAGTCAGCCTACAGGTTTGGACTGGGTTCTATTGCTGGAG
Seq A exon
GTCAGTCATGGCTAAGTGTCACTGTCACTGTTCCTTCGGTCTTCTCTCTCATTCTCCACCTTCTGCTGACCGTGGTTGTTCCCCAAGTCAGTTATCAACCTGCCTGTATCTGTTAGGTGTGGACGAGAGCCAAGGGGGCTTTTCCTAAACGTGGGCATGCTCGGCATCTTACAAGAGATCATTTTTGCTCCCTTCTGTGAGGTTAGCCATTCTTGATATGCTATTAATTTAAACTCTAGTGATATCCTCTTGTCAGAGGACATTAGAATAAAAATTAAAAGTCTGCAAAGGTAGTTTGGTAGATCTATGCATAAAAAAATACTTCTGCCGGGCGTGGTGGCACACACCCTTAATCCCAGCACTCGGGAGGCAGAGGCAGAGGCAGGCGGATTTCTTAGTTCAAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCGAAAAACAAACAAACAAAAAACAAAACAAAAACCCTTCTGTTTTCAGTCTTTTCTTTGATTTTTATCCACCTATTTCTTTCACTCAAATTACCTTACTTCTGGCTGAGCTACTGGTATCCCTTCATTTCAG
Seq C2 exon
CTGTCGGAGCCACTGCCGTGTATCCTATCGATCTTGTAAAGACTCGAATGCAGAACCAGAGATCAACCGGCTCTTTTGTGGGCGAGCTCATGTATAAAAACAGCTTTGACTGCTTTAAGAAGGTGCTCCGCTACGAAGGCTTCTTTGGACTGTACCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015112:ENSMUST00000015256:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=PU(14.3=46.7)
A:
NA
C2:
PF0015322=Mito_carr=FE(54.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAAGGCCTCGGGTGATG
R:
TCGGTACAGTCCAAAGAAGCC
Band lengths:
246-843
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types