GgaINT0093627 @ galGal3
Intron Retention
Gene
ENSGALG00000009728 | F1NWI3_CHICK
Description
NA
Coordinates
chr2:24091716-24095652:-
Coord C1 exon
chr2:24095514-24095652
Coord A exon
chr2:24091875-24095513
Coord C2 exon
chr2:24091716-24091874
Length
3639 bp
Sequences
Splice sites
5' ss Seq
CCGGTAAGT
5' ss Score
10.91
3' ss Seq
GAAGGTTTTTCTGTCTCTAGGTA
3' ss Score
8.65
Exon sequences
Seq C1 exon
GGCGCTAAGGCGTGTTTTTTGCGTGACATCCCCTTCTCTGCTATTTACTTCCCCTGTTATGCTCATTTGAAAGCTTCATTTGCCAATGAAGATGGAAGAGTCAGCCCTGGAAATCTGCTCTTGGCTGGGTCAATAGCCG
Seq A exon
GTAAGTGCCCAAACGGCTTTCTATGTGCATTTGTGTTACACCAGCAGTGCAGTAGTTAGAGCACATTTTGCAGCCTTGTGCCCAAATAACATAAAGCTGCTATGCTAGAGAAACGATCTGAGGTTAAAAATAAAGATCCTGCAAGTTTGAGGTATATTAATAATGGTTAGGGGGGAAAAGGAAAAGAAAGATTGAAGTTCTGATGTTTTGTCGTCATGTATCATCTTTACTTGTGACATTACTGTGCTTTGGTTGGCTGAATGACTGGCAGAGTTTTTTGTTGAAATGGTTTATAAATGAAATCACTGAAAATAAAATCATGGCATTCGTGAAATTTTGTGATCAAAGGAATCTTGAATATTGGCGTGTGGAATCCAAGAACCATGCTTGCAGAACACGCTGGCAAAACATGACAAAGTGACGAGAACTACTTGCTACCCACAGTCTCCTGTGCAGTTATATGGCTTTGTGAGGACTTTGCCCTTATCAGAACAGTTTCTGAACTGGATTGGATTCCATTGTCTTGCCTTCTGCAACAGGGACTTGTATGGAAGAAAGCATAAGGAGTTGCTTGTTGTCTTGTGTGCCATAAGTTGCTGATTCCTGACTACCCAGATACCAAAGAGGTGCTGAGTGTCAACTTGAGCACTTTCCTGTTCTAGTCTGCTACATAGTGGATAGGAAAGCCAAGCAGTGCTTAAGTTGCCACAGATACATTCAATTTGAGTGTGCCAGTGCCTAAGGGGAAGATAGAGACACTTTGCAGGCTGTTTACTTTTGTGTCAACTGTGTAGTTGGTCCTTGACATGGTGCCCAGCTCCTACACCCAAAGGGGCTCGCTGCCTCATGAAGTGGGCAGCCTGGGAGCCTGCTCCTGCCATATCCATTCTTCAGAAGTTCCCTTCAGGAAACAAGTAGGCTCAAAAGCTTGTGCAACATGGCCGTAGGGGAATGGGTAGCAAGCAGGAGGTTCCCATCAGCACTCACAAAGCAGATGTTTTCATCATGTTAAGCATATGCTGCTTGACTTCTCAGAGCTTCACCCAAGTTCTGGCCAGCTGGCAGGCTGCTGCAGCCTGGCAGGCTAGAAAAATGATGGAGAGGCATGGGTCCAGCACAGATAAGTAGCTCATCTGTTTTCTTGTTTGATTTGTAAGGTTTCTTCTTCCTGGGGGAGCTGTTTTCAGTCAGGATTATACATGGGGCTGTGTTTCTTAAAGATTAAGGACCTTTTTAAGCCAGTAACTGGTTGCTGGATGTGGCCAAGGCCAGCGCAGATCAATTGGCCCGCCTTGCTGAAAGCATATGGCTTCAACTGCTTATGTTGGCATTCAGTCACCTGTAGTGCAGAGGAATCAACCTGGCACAAGGAAAACCAGCTGTGTTATAATGACTGGTGCTTAGAAACCCTGTCCTCTCCCATCCCCATGCCCCAGAGCTACCAATCTCCAAACCCTTCCACAGGAGCTTACATCCATCTTACTTCTCACCCAATTTAGCAGAACAAAACCATTTTTGAACTTCAGTTCATTTTTACAGACGTCAAACATAAGTTGGCATTATAAAGCCGAGCCATTTCTTGGGTTTTCCTATTTTTCTCTTTCTAGCCATTGTCGGTTGATTGCAGACTGAGATAACTGTCCCTTTGAAGTCCAGGCACAGAAGCAGTCTTTATTGTTGCTGATACAGCTTACCAAACTAGCTACGTTGTGAATTTTATCCAGGATTTCCTGTGAATCCCACTCAAAGTTAACTCTCATGAGCAAATTACCGTATGAAAGATCCACCATTCGTTATACGGCTTACAAAACCAAGACATTTCTCTATTGGGTACAGATAAAGTATGGTGGGACATGCATGTCAGCCCTGCTTTGCCCCAAGAAGGCTGAGGGGAGGCCACAACAAGAACCCCACACCTCCATCACTGGCTCCAACTCTAAACATGCGGTGCCCTCTGGTACAAGCTGGCCAGCTTGGATGCACACCCGCACCTTCTGCCAACAGGTGTTGTGTCTGCTGTCTGTGTTTTCTTCCTTTTTGTTGTCACTGGGGACACATGCAACACAACACGCACATCATCTGGTTGGATCTGCTGCTGTTTTCACTGTTCACCAGATCAACCTGTTGTGCCCCATGGTGTTTTCTGAGGAGATGATGCTAGTATCAACAACAGGATATCTCTTTAATTTGCTCCCTTTGCTTTCTGCTCCCATGAACTTCCTTCTCTTCCCATGCTCTTTTGTCTCATTCTGACTGTATGCTCCTCGGGGCAGCAACCTGTAAATTTTTAGTTGTCTATGAAGTCTTTTGTGCTTTATACATAACTCTAAAAACAGGATTTAAAAAACAAACTTGTTTTATGCAAAATATCCTCAGCAATAAGGAGTGAGGAAAAAGGAGATGGCAGTCAATGTGTAGTAAGCAGAATTGTTTCTAAGTATGTCCTTTGGTTTTCCTTAAAAACACTGGTTGGCTTTTGAAGAACAGAAGTCCAGCTTTAAATTGAAGACTCAAACCAATATCCTGGTGTGGGTAAGGGTAAGCAGAGAGGAATTTCAGCCTCTCCAGAGTTCAGAAGCCTTCACTGAGTACAGTGTGGCACTTGCTTGCCAGACTGACCACTGTGCAAGTTCAGTGTGTGTGTTATTTTGGGGGGTCCAGGAGAGGAGGAGGAATTCTTTTGGTGATATGTACCAGCTTCCATCTCTCCGAAGCAGCGTGCAGAAGGATGCTGTGCTGCCTGAAGCCAGACCACGCTGGTTTGGACAGAAGTTGTTACAGAATTATTAAGCCTAAAAAAAAAAAAAAAACCAAAAAAAAAAAAGCAAAGGAGATTTATGCATCTACATCTGACCAAGTTGGTTTGGAACAGATGCAGAATGGAAAAGTAATAAAACCATAAGAGACACTGTCTTCTGGGTACAGTCTCGATGCCTATTTTTTCTTCCTTTCTTTCTTTTTTTTCTTAATTCTAAACGTGGGCAGTCTCCATTTGGACAGGAATGAATTCAGAGATATTGCCTGTTGGTAATTTGGCCTTTTTTACTTTCAGTTGATTACCTGCCAGGGTAAATTTAAATCTTCCTCCAAGTGTTCTGCTGGGGATGCCAGCTGTGACTTTGCAGCTGAGCAATCTGCCGTTCCCAATGAGAAAAACGAACCTTCTTTTAACCTTAGCTCTCATGCCTTGCTGAGCATTATCAGTTCTTGGTAATGCTGTTGCGTGGGGATAAGAGCAGTGCGTGTGTACAGGCTCTTCTAGCATAGCGTGCAGCCAGTGTGCCAGGAACCACAGCGAGGCATGAAGAGGAAAGGGAAAGATCGACCTCACCTCCAAAAACATTGTGCTTATTGACTATGCAAGTTTCTGGTTAGCACTGAAAAATCCAGCCTATGCCTCCCAGCTTGACAAGGAAGCCTGTGATACGGTTTTTCCTCTAGGAGAAGCTTTCTCTGGGTGAAGCCACGTCCACAACGGCTGCCTCCTGTTGCTTGTTTTCCTTCCCAGCTTCTGCTCAAACCTTATGTGCCGGGTTCTGCTAATGTAAGGATGAAGGGCACGGTTACCCCTGGGGAACTGAGGTTTGTAGTATATGTAACAAGTCAGCAATACCAACCCGAAGGTTTTTCTGTCTCTAG
Seq C2 exon
GTATGCCTGCGGCCTCTCTGGTGACTCCTGCAGATGTCATCAAAACAAGGCTACAGGTAGCAGCCCGGGCAGGACAGACCACTTACAGCGGCGTTGTAGATTGCTTTGTGAAGATCCTTCGAGAGGAAGGTCCAAAGGCTCTGTGGAAAGGAGCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009728:ENSGALT00000015833:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=PD(32.6=63.8),PF0015322=Mito_carr=PU(15.6=31.9)
A:
NA
C2:
PF0015322=Mito_carr=FE(55.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]