MmuINT0145476 @ mm9
Intron Retention
Gene
ENSMUSG00000015112 | Slc25a13
Description
solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13 [Source:MGI Symbol;Acc:MGI:1354721]
Coordinates
chr6:5992741-6002903:-
Coord C1 exon
chr6:6002765-6002903
Coord A exon
chr6:5992900-6002764
Coord C2 exon
chr6:5992741-5992899
Length
9865 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
3' ss Seq
GTATCGTGTCTCGGCTCCAGGTA
3' ss Score
8.2
Exon sequences
Seq C1 exon
GGCGCCAAAGCATGCTTCCTGAGGGACATTCCTTTCTCAGCCATCTACTTCCCGTGCTATGCCCACGTGAAGGCTTCCTTTGCAAATGAAGACGGGCAGGTCAGCCCCGGAAGCCTGCTCTTAGCCGGTGCTATTGCTG
Seq A exon
GTAAGTCTTATCCACGCAGCAGAGCTCCCCGCTCCAAACCCCCCAGGATCTAGCCTTACTCCACCCAAGTTACACAAATAGGACTTGTTTTTTTTCTGACAGTTTTCCACTGAGTATACCTGACTTTCTTTGACTAGCGTCTAGAAGGCAGATAAGAAAATAATTTGTATTTTGCCGCATTATTAGAAGAACTTTAGCTTTTAGAAAGTGTTTGCTAGTGATTCATTCATTTTTATTTCTTTGTTTCTTTAGTTTCTGTGATACTGCTAGATTCTAATTCAAATTCTGTATTATTTCCTAATTTTACTTAGTAATACAAAAATAAAAATGGTTTGACCTAAACTTTTTAAAACATTAAAGGATCATGCCCTAAAGGTTATCTAAACAAATGATTACATGTAAGCTTGTCCAGAATTTAAGTAAACGTCATTAATGTATAGTTAGAAGAAGCACAATAAAACTAGACATAACTAGGGTGATTAGATTTTTTTCTTGAAGTGGCTGTCAAGTCGGGGGCTACATGTATTTCAGTGAATCATAGAAGTGACAGTCTTATGTCTTTAGTGCTGTGCTGGAATAATTATGAATATTATACAGAAAAATAGGGACTTAAAAATAGATACTGATTATCAGCACAGTCAGGGAATCAGTACTTGGCTTTTGGGAAACTCCTTGTCCTGAGAATCTAAGGGATGAATCTGGCTATATTAGCTCTTTAAGTGGTAGCAAGCTTATTATGGGTTAACAAACCCTAGGGCAGGCAGTCCTGAGCTTCAGATTGGAGGTTAGAGCTGGAGAACAAGATTGGAGGTGAACCTCAGCTTTGAATCGCTACTTCAAGCCTCCACCTTCTGCAGGAACCCCAGTAGCAGGAAGTTGTACCATTCTCCTTTATCCTTAACATTTTCTTCCTCAAAGGCACGGATGCTGGTCTGTGAGCCAGGGCTGTTATGTCCTGGGTGATTGAGGATTTTAGTTGCTGAGTAAAAAGATCCAAACACGAACACTAAGGAAGCAAGATCTGGAATACAGAATCCCTATTTCCATTTCCAACGTGGCCACTTATTTGCTGTGTCCCGAGTTGCCATTTACATATGTAAACATGAGGAAGAATGGAACGAAGGTATTATATAGTTTATTTCAACCCCCCAATTGAAGTAAGATTAGGGCCTCAGGAAAAGTAACAGCCACTGATTGATGTGTGATCTTTGTCAGTTGTTGCTTCACCAGACTTGATTTCCTCAGCTTTGAGTAGAGAATATACTATAAAGTCCAGGATGTGTCACAAGGAGGGGAGCATCATGGAAGCTCTTATCATAGTGTCAATCATGAATCTTGTATTCGGGAAATATGTAGACTGAATCTAGATTCTAGGGGAATTGGCCCATCCAGTCACTCCACAAGTACCAGATAGGAGGTTAGGGATGGATAGTGGAGCTCAGCTCAGGATGAAGGACTCACACAACCGTTTTTTCCTCAACGTATAGAAAATAGTTCACTCTTCTCTCAGGGAAAAGAGGCACTGCGAACGAATTTCATGTGTGTAGGAGTATGCTAGCTAGCCCATGATATTAGAGCTGAACATTTCAACATTTCTTTTTTTTTTCCTGATTATGCAAGTGATACAGCTTGTGGTAAAATATTTAAAAAGGGTAAATATTAGCCATAGTTCTATTACTAGAAGAGGTTTTCTACTTAATTTAAAATTTTATTATAATTATTCATGTACTTTATGAAGATATGCATATATACATATGCCCGGGTGTACAGAGCCCAGAGGACCCGGTGAGGAAGTCAGTTTACTTTCTACTGTGTGGCTCTCAGGGATCAAACTTGGATAGGCAGGCTTGCCAGCACTTGCCTTAAACCCTGAACCATCTCTCCAGCCTTTTTGCTTCTGCCTATTTTCGTGGTTTTTGATGGAGTTTCAATCACACTGTACCTCATCCCATCAGCATTGTTGACTATTGTAGGGTGATGATTAGTGGCATGTGCTATGGAGTCAGGCTGCGTGGGTCAGATTCATCTCCCCACTTAGACCTCTGGGACTCACACAAGCCATTGATCCCCTCTTGGCCCACTTTGGGGGATAAGAGCAATCTTAGCTTCACTAAAGAATTAAGTGGAATAAAAAGACAAAGATTTAAAGTAGTTGACATTATGTCAGTATTCAGAAATATTCAACTATATTTTTCTTTATACTTTTTGAGATTATAATATAATTATATTATTTCCCTTTTCTCTCCACAGTCCTTCCTAAGTCTGTGTTGTCACCCCTTCCTTTTCAAACAGATGCCTCTTTTTTCTCTAATGGCTTGTTACATCAGTGTGTTTTCTACATATATAAATTCAACCTGCTCAGTCTATATGATGTTTATTATGTGTATGTTTTCAGAGTTGACCATTTGGTATTGGATAATCAATTGGTGTGTTCTTTTTGAGGGAAGACTATTTTTCCTACTTTGAGCATTCCTTAGGAGTCTATGTTAGCAAGACTATTGATGTCATCCTTGTTTAGTTCCCGTTTAAGCATCCCTGTTATTAAGACTTCAAGGAGACACAGTATGAAAGCAAACTTTATGTTCACTTGGCTCCAACAATCTATCTGCCCCTCTTCCACGAGTGTCCCTGAGCCTTAGATACAGAAACTGGATTGTAGATGTTCAGTTGGGACTAGGATCCATCACTCTGCATTGTGATCAGTTGTGGTTTTCTGTAGAGGTCTTTGTTGGAAAGAGAAGATTCCTTGATGAGGGTTCAGAACTACAGCTGTCTGTAGGTACAAGGAAAAATACTTAGTTAAGAGTTTAGGCAAGTGTAGGTTTTCCTCCAAGATCTATGACTTTACTAGTCTTAGGAAGTTAGCTAGGTATCCAGCAGAAGGCATGATTCTATTTCTTGTTGACCAGGCCTTTTGTCCAATTAGAAAATTGTTGGTTACCACCAAGGTATGTGTGCCATTACTGCAACTTTAGGGCTATTATGTCGTACCAGTCGTGGTTCAGAGGCATCATAGTTGGGTAGGACTTTTGGTTTCTCCCCTCCTTTGGAAACCTGCATTCTGGTACCATGAAAGATGATCCACAGGAAGAAGGCTTTTAAGTCCTATCGCTGCTTCGATCCTGTTGGTTCTATGTCTGAAGTGGATGGTGTCTTCAGGCATAGAAACTTACTCTTTCTCCTCTAGGTGGCAACCAAGGACACCAACAGTAGCCTATAATGTTTTGGGACTCTCTTAGACAACACAGACCAGTAACTCAAAAGTGGGTGTTTCATGCCTTGTGTTATAAGGTTCTTATTAGATAGCTTATGGTTCTTGGGGATGGCATCATTAGCCCAGATGGGAAATTTTCATTCAAACTCTTTATGGATATGTGTACAGATACTTGTATATGTTATAGGTAGTTTTCAGTATATAGTTAATAGCACAGCTCTTTATTATCTTTTCAGATACCCTCAATTATCTTACTCTCCTCGCTCTTTTGGTGTTTATCTCTCTCCCCTCTAGTTAAAGCCTTCCCACATTCACACATCAGCGTCCCTCTTTACTTTCCTAGTTTTTATATACTCTCTTCAGAAGATTTGGACCTAGGAACATCAGATGAGAGGAAACATGTAATATTTGCTTCTCTTTTCCTGGGATACCTCACTCAATATGTTCATTCTTTCCTAGATTTTTATAGTACCATTTCTTTCTTTGTAGCTGAGTAGTATTTCATTGTATTAGTCAGAGTTGTCTAGAGGAAAAGAACTTATATAATGAATCTCTAGATAGTAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAAAAGGAATTTATTGTAATGCCATACAGCCCGAGATCAGCTACTCAAACAATGTCTGGCTGTGAATACAGGAATTGCTCAGTCCACAATGATAGATGCCTCAGCTGGCCTTCAGAATATGCTAGAACCCCAAAGAAGTGGGCTCTGATGCTGATGAGCGAATGTATGTGCTAGAAGGTAAGAGCAAGCAGGAGGTGTGGCCCACATTAAAGGTGTGTCTTCCAAGCTCAAGATCTGAATCAAAAATGTGTGTCTTCCTACCTCAAGGCCCAGACTGGAAGTGGATTCACCCACTCCAAACTTAGTTTAAAAAAAAATCTCTCTCAGGTGTTCCCTCCATTTCTGAATTGTAGTTCATTCCAGATGAGTCACGTGGACAACCACTAATGGCCATTACACCTATTGTGTATATGTCCTACATTTTTATGATCTATCAAGTGCCTGAGTGATGCCCAAGGAAACACAAACATAATGCTGATGGAAATGATGAGGACAATCCAGGGTTTTAAAATAGAATTCAATAAAGAGATAGAGTCATATACCTCTTAATCACAATACTTAGAACTGTCCAAATTACTGAAACTTTTATATAAATGATGTTATTAATACAAGCAAATCTTTAGGCTTAAACACTTTTCTATTTTGGATTTGATCGCCTTTTTGGAGAAATAGATTCTTGGAACTAAGGTTGCTGGTAGAAAGTATGAATGGTTTTTGTTTGATTGACTGATTGTTTTTTACATGAAACCACATTAGTCTTGAGGTCCTGGGGTCATTGCCACCTCTGTGCTGCCGATTAGCCCCACAGCCATCCTGTTCCCTGTGCACTTACCTGCTGTGCTGAAACACCGCAACCTAAAGCAGCTAGAGAGGAAACATGAGATCTGGCTTACCCTTCCACATCACTTTTCATCCCTGAAGGATGTCAGGTTAGGAACTTAAACATGGCAGGAACCTGGAGGCAGAAGCTGGAGCAGAGGCTGTGGAGGGGTGCGGCTTATTGGCTTGCTCAGCCTGCTGTCTTATAGAATCCAAGACCACCAGCCTAGGGATGGCACCGTCCACAGTGGGCGGAGCCTTTGTCCATCAATCATTAATTAAGAAAATGTCGCCACAGGCTTGCCTATGTTCACATGTTATGGGGGCATTTTCTAAGCTGAAGTTTCCTCTTCTCAGATGACTATGGCTCATGTCAAGTTGACATAAATCTAGCCATTGTACCTGGGGTGTCTGTATTAGTAACTCAGAACTTTTCAGCTTAGAACACATACTTACTGTATGTTTTGGGGTGTGGGTCAGGAGCATTTTTTGGGGGGTGTCTATGGCTTGAGGTCTGTTTCAAACTCCTGGGAGGGAAGAGCTGCTGGCACAGAAGATTTGATATTTAAATAATTCAATTCTTGGTGCCTTGAGAATATAAAGTAGTGCAACAGGCCTGGGTAGTGAAGTGCACACACTCATATAACTTTCTTCCCAAATGTCTTAAACTGCTAGAAAATACGACAGCATCCGTACTCAGAAAGCAACCACCTTACATCTGAAATTGGTGATGTCATAGGCCAGAACAGGCAGGAAAAAACTATTGATTGTGTAAAGTGTAAGCGAAGACTCTTGACCTCCGAGTAAACAGAAGAATGTATTCTAAAAGCAGGAAGCTGCCTTTCTGGACACATAGCCAGCCTGGCCACTCCCCGTGCCACCTAAAGCTTAAAGCAACATTTGTCTGCAAGATAAAACTGAGAACTGTAACGTAGAGAATGGGCCATTGGCCGGATAACGGCTCATGTAGAACTGAGAGGAAGCAGGACAGGGCTTAGGCTCATGTCAGACCTTAACCACAGGTGCGGCAAAACATAAATTAACAGCTTTTCCTCAGTGGAGTGGAAAATGAAGTATTCTCACTGCACAGTTCAGCTGGCTTTCTACACGCCAGAATTCTGGAAAGCTCAGCCCTGTAGCCTGCCTTAGCCCTTTCAGGATAGAGCGCTTGCCCATCCAAAAGGGGAAGTGGTGGGGAAGTTTGTCTGGAGTGTGGCAGATGCCACCCAGGGCTGAGTGCATTGCATGGACAGCCTTTTATTTGATCCCGAGTATCAGTAGACAGCCAGCCATGCTCAGACAGGAAGGGGCAGCAGGGCATGTGAACTGAAAAATTACAGAGAAAACGGTAATTTAGGGACCACAGGGGAACTTGCAAGAACTGTAATTGGAAGCTTGGAAAGGGGATTCGTTTTATCTTACTTTTTATTCTAAAATAAAAGTAAGTCCACAGGAAGTTGTAAAAACAATATAGTAATCTTTCACCCACTCTTCTGGGAATGTATACTTCATAACTATCGGACAAAGTTAAACTCAGAAAATTGACATGTAACACATGTCAGAGTTCTGTGGCATTTTAAATTTATTTTATGTGTTTATTTGAGGATGGACCCAAGGGTCGAATGCAATGATTACTTGATTATCTTAAGACAGTTTCTCATTAAGAGGACTGAGGCTAACCTTTGTAGACCAAAGAGGCTTTGAGTAGTTTTTTTGTTTTTTAATTAATGAAATGATTGTTGAAATTAAAAATCTCTATGGTTCTAAATGATAAAGCAGACATGATCAAAGAAAACCAAGCTAGGCCATATTTCATGGTGCTTGCCCCTAATCCCAACACTCAGAAAGCTAAGGCAAGAGAATTAAGAGTTTGAGGACTGCCTCAAACCTGTGTTAAGTAAAAAATCAGGAAAAAGAGAAAAGGACCTTTAGGAAATAAAGACATGGTAAAGATTACCCCCTAGAATATGGCATAAAAATACAGAGATGAAAAAATCAGAACTGAAGGGGCATAGAACATAGGTGTACTGTCTGTTTAAAAGATATTACCTTGATGTGAGAATTAGGATAAAGGACAGAAACCACTTAGTAAAAGATGGGCTTCTAGTCTGCAACAGTACCGTACCTCCCACTTGCCCAGGACATGAGGTGTGGCCCACATTGATGTAGCATCCAAGGGGAGGACAGAGCCTGCATCTGCTCTGCTTGCGAGGGTTCCACTCTCAGCAGCCAGATCAGGAGTGAATGTAAGAAGGACACATGGGATACTTGAAGCAACTTTAACAGAGAAAAGTTTGGGCTGAAAAAGCTGGGAATCAATACACATTGTCTCTGACGCTGATGTTCATACTTACTGTGCAAGAAGACTGCGTGAAGGAAAGAAAGGGGGTGTGAGCATATTAGAGTCGCACCCATGTGGCAGATACATACATGCCACAGCTATGTCACGGCAATGTGTATTTATCTAGTGGAGAAATGGAGATCAAACTGGAAGTGAAGGAGACAGAAACATACACAGGACATGAGGAAAGAGTCCAGTAGCCACAGTCAGCAGAAATGCATGCAGTGAAGATCGAGGCTTTCAGTTCAGCTCTAGAAGGAAGGGTAGGCAGCGGGAGATTTTTCTCCTTTTTTTTTTTTTTTTTTTTTTTTTTCCTTTTGGTTTTTTAAGACAGGGTTTCTCGGTGTAGCCCTGGATGTTCTAGAACTCACTTTGTAGGCCAGACTCTCCTTGAACTCAGAGATCTGCCTACCTCCTGAGTGCTGGGATTATAGGAGTGCACTGTCACTGCCCGGCTGATTTCCCTCCTTCTTAGTAAATAACTTTATCACATTGCTGTCAGTCGTCAACCTAGTAGGTTGATCATATAGCTAATAGCTTAAAAGTGTAATGTGGAAAGCCTTAACTTTGACCTAAAATAAATATGTAACAAACCTTTAAGCCTTAAATGGAGAAAACACAAAGTTATTAATCCTAATATGATACTTATAAAATTAATGTCTTTGTCCCCAAAGCTGTCTGGATTCACCCAGTCAGGTTTTGTTTTCTTCCTGCTGTCAGTGATCGTCTGTACTCGCTGGCTCCCTAGAAGTCCCACAGTTGTTTTTATTAGCCTCTGAGCACCTCATGTCATTTCTGTTGCTGAGGCTATGGGTAGCCCCCAGGGCTACATATGCACGAGTCTTGTCCATAATTAATCAAGCAGGATGCCCGCCCTCTTCCTGTGAGGACACATAGACAATCCCTTCCTATCGTCTGGTCTCTTCTTCTTCCACACTCAAGCTGTTTCATCAATGTGGCATAAGGCAGAGAATGACCTGGCAAATTGATTCATAATCTTTGTCCACTCGGACCTGGAAAACCAGTAGCTGTCAGATGACCAAGCCCTTTGTGGAACATTTGACTGGACTAGCCAACTTTTAGAGTAGCTGAACTCAGTTTTCCAAGTTTAGTGTCAACCCCCCTCCCCACTACACATGCCCCTCAGAAGTCTACACAACATGTCTGTAACAGTTCTGAGAGCCTAGACGTCATCCATTTGAGGGTGTGGGGGCTACAGACGAGATGGCTGGGCTTGTGTTTGAGTTATAGGATTTCTAGCACACGCCCCCAACACACACACATACATCAATCTGCTTTGCCAGTCATCTTGTTAAGTAGTTTATGTGTTTCCTTTCAGCATTTCATTCAGACATTTGTATTCTCGTTGCATGTATTCTTCATGCTCTCCTCCAGCATTATTCATGACCAGGAATTGTGTATGAAACATACCTTCGTGGGAAAACAATGTGTCCTTCGTTATTACCCCTGTGTCTTTCACAGCACCACATGATCGCATCTGCAGCGTGGTTAGGACTACTTCATTTCATGTCTAGAGGAGACTCCCTGCTAAATTCTCTTTAAACCAGGGAGTGAAGCAAAATGGCCAGTGTGAACAGTGGGTTTCTAAGCATCGTGTTTCCTTTCGTCATGTGAGAAGATAAATTCCTGGCTCAAAATTACAGTAATCCCTCCAAGCTAATAGGAGCCCGATGCTGCTTCTTAGATGAACACTGGATAGAGAGTGAGCTTTGCATATGTAAAAGGCAGTGTTTGGGTAATGACTATGCCTAAGAATTAGTGTTAGAGGAGTTGAGTGGAGATGGAAGGCGAAGAGACACTCGCTTCTCTTCCAGTAGAAATGGGAGCGTGTAGTTCACAGTTACACCCTCCCCCTCCACACACACTCACTTGCAATGTGACTTTAAAACTGTCTGTTGAAGGATGAGATGGAGTTCTAAGCCAGACCATGTTGGTTTGGACAGAAATTCTTACAGAATTATTAAGCCTTAAAAAAAGCAAAGGAGATTTATGCATCTGCATCTGACCAGTTTGGTTTGGAATAGGTTCATAGTGGAAAAGTAATAAAACCGTAAGAGACAGTGTCTTCTGAATGGTCTCCATTTTAAAACTCTCAACTTGGGCTGCCCCATTTTTGGATAAAAAGCGACTGTAAAAATAATTTACTGTAGGTAATTTTGGGAGGGACTTGTTGGGAGGGATTTGTTTGTTTGTTTGTTGTTGTTATTGTTCTTTATCATTTACCAGCCAGTATAAATTTTAAGCTTTCTGTTTTAAAGTTTTCTAGATGTATCGATTTGGGGGTGGGGGGGGACTGTGTGTGTGGAGTCACAAACAGGCTCCTGGTGTTTGCTTAGCGATCAGTACAGCCTTCTGGTAGGAGAAGTTGGGGTTTTGTTGTGCAGGGTAGCTGGATGTGTGAGGGAAAGCAGCGTCCTGTGGCTGCCAGCAGCCAGGAAACCATGAAGAGGAAACACATAATAAGCTTCGCCTCTGAAAAATCAGACCTAATAACTTCATGAGGTTCTGATTTCAACAGGAAAGCAAAAAAATAAAAATAAAATAAAAAATAAAAAATTTTTTGAAAACCACTTTCTCTGTTTGTTCTCAACCACTTGAAATAGTGTTACGGATAAATAATTGCTTAGAAATATTTATGTATTTAAGAATAGAAACAACAAATGAAGGTTCGGGGCAGGGGGGTTGGTCGCTGCAGACAGTACTGTCACGTTGTGCTCTCCAGAGGACAGCAAAATAGGCATTTTATTGCACTGGCTGCTTAACTTTCTTTCCACGGCCAGCAGTTCAAAGCACAGTTATTTTTATATAGTGAGAATGTGAGTGGACTGACATGGTATCGTGTCTCGGCTCCAG
Seq C2 exon
GTATGCCTGCGGCATCTTTAGTGACCCCTGCTGATGTTATCAAGACTAGATTACAGGTGGCTGCCCGGGCTGGCCAAACCACTTACAACGGTGTGACCGACTGCTTCAGAAAGATACTTCGAGAAGAGGGCCCCAAAGCATTGTGGAAAGGAGTTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015112-Slc25a13:NM_001177572:15
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=PD(32.6=63.8),PF0015322=Mito_carr=PU(15.6=31.9)
A:
NA
C2:
PF0015322=Mito_carr=FE(55.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: