GgaINT0095482 @ galGal3
Intron Retention
Description
NA
Coordinates
chr2:41563782-41564493:+
Coord C1 exon
chr2:41563782-41563830
Coord A exon
chr2:41563831-41563944
Coord C2 exon
chr2:41563945-41564493
Length
114 bp
Sequences
Splice sites
5' ss Seq
TCTGTCTTC
5' ss Score
-22.64
3' ss Seq
TTTTTTCTTTTCCTTCTTAGTCT
3' ss Score
10.03
Exon sequences
Seq C1 exon
CCATTAAGTCTCTTCTTCACTCTCATCCGTGTACCTGCTGAGGACATCT
Seq A exon
GTCTTCCCATTCTGTCATTTATGGCTTTTTGGGGGGTTTGATGTAGCTAAGGTGTTAAAGGTGCAGGTGTAATCTGTGATTTTAGCCTATTTCTTTTTTTCTTTTCCTTCTTAG
Seq C2 exon
TCTGTAAAAATGTGAGAGCTGATATTGTTTTCCTCGTGGACAGCTCGAACAGTATTCGTGCAGCTGAGTTTCAGAAGATAAAGGATTTCATGCAGTCATTTGTCATCAAGGTAGATGTTGGGCTTGATAATGTTCGAATTGGCTTGATTCAGTTCAGCTCTGAAATAAGAGAAGAGTTCCAACTAGACAGATACAGCACTATAGCTGATGTGCAGAGAGCCATTCAGGAAATGCAGCAGATAAAATTGGGAACACTGACTGGGAAAGCACTGACCTTTGCTGCCTCTTACTTTGATCGACCTAAAGGAGGGCGTCCTGAATTGAAACAGTACCTGATAGTGATCACTGATGGAGAAGCCCAAGATTCAGTAAAAAGCCCAGCCAGAGCCATACGAGACAAAGGTATCACTATATATGCTATTGACATGCTCCAGGCGAACAATTCACAACTTGTGGAGATTACTGGCGCCCAAGACAAAGTGTTCTTTGAGAGTGAAATGAACTTCTCAGAAAAGCAGATTCTCTTTGAAATTTGTAATCTACAGAAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011567:ENSGALT00000018866:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0009223=VWA=WD(100=92.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCTCATCCGTGTACCTGCT
R:
AATGGCTCTCTGCACATCAGC
Band lengths:
255-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]