GgaINT0097019 @ galGal4
Intron Retention
Gene
ENSGALG00000005644 | MYO1G
Description
unconventional myosin-Ig [Source:RefSeq peptide;Acc:NP_001026132]
Coordinates
chr2:4039039-4039419:+
Coord C1 exon
chr2:4039039-4039247
Coord A exon
chr2:4039248-4039325
Coord C2 exon
chr2:4039326-4039419
Length
78 bp
Sequences
Splice sites
5' ss Seq
CGGGTAGGG
5' ss Score
6.91
3' ss Seq
CCACCTCCTGCCTGTGCCAGGTG
3' ss Score
9.17
Exon sequences
Seq C1 exon
GTTCTCAAAGGGCCGCATCTACACCTACATTGGGGAGGTGGTGGTGGCCATGAACCCCTACCAGCCGCTGGAGCTGTACGGCCCCTCTGTGGTGGAGCAGTACCGGGGTCGTGAGCTCTACGAGCGCCCGCCGCACCTCTTCGCGTTGGCTGATGCCGCCTACAAGGCCATGAAGCGCCGTGCCAAGGACACCTGCATCGTCATCTCGG
Seq A exon
GTAGGGGGCAAGTGGGGGGCACCCCAGGGAGCAGGGTGCCAATGGGTGCACACCTCGCCCACCTCCTGCCTGTGCCAG
Seq C2 exon
GTGAGAGCGGGGCCGGCAAGACGGAGGCCAGCAAGTACATCATGCAGTACATCGCCGCCATCACCAACCCAACGCAGCGTGCCGAGGTGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005644:ENSGALT00000009051:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(10.4=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTCTGTGGTGGAGCAGTA
R:
GCATGATGTACTTGCTGGCCT
Band lengths:
172-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]