MmuINT0104283 @ mm9
Intron Retention
Gene
ENSMUSG00000020437 | Myo1g
Description
myosin IG [Source:MGI Symbol;Acc:MGI:1927091]
Coordinates
chr11:6418737-6419190:-
Coord C1 exon
chr11:6418982-6419190
Coord A exon
chr11:6418831-6418981
Coord C2 exon
chr11:6418737-6418830
Length
151 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCT
5' ss Score
8.16
3' ss Seq
ATTTCCTATCTTCTCGGCAGGGG
3' ss Score
8.99
Exon sequences
Seq C1 exon
GTTTGAGAAGGGCCGTATCTATACCTACATTGGTGAGGTGCTCGTATCCGTGAACCCCTACCAGGAACTGCCATTGTATGGGCCAGAGGCCATTGCCAAGTACCAGGGCCGCGAGCTCTATGAGCGACCACCTCATCTTTACGCCGTGGCCAATGCTGCTTACAAGGCAATGAAGCGCAGATCCAGGGACACCTGCATCGTCATCTCAG
Seq A exon
GTACCTGTCCCGGTAAACCAGATGCCGGAGCCACGCCTGACTAAGAAATGAGGGTGATGGTGCTTCCACATTTGTGGGTTGGACTGGGACAAGGATCTGGGCTAGTGGTACCCAACCCAGTTGGTTCTATCATTTCCTATCTTCTCGGCAG
Seq C2 exon
GGGAGAGTGGGGCAGGGAAGACAGAAGCCAGCAAGCACATCATGCAGTACATTGCTGCTGTCACCAACCCAAGCCAGAGGGCTGAGGTGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020437-Myo1g:NM_178440:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=NA C2=0.317
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(10.2=100)
A:
NA
C2:
PF0222312=Thymidylate_kin=PD(39.0=79.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGTATCCGTGAACCCCTACC
R:
CTCTGGCTTGGGTTGGTGAC
Band lengths:
247-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: