RnoINT0097148 @ rn6
Intron Retention
Gene
ENSRNOG00000059140 | Myo1g
Description
myosin IG [Source:RGD Symbol;Acc:1306016]
Coordinates
chr14:86794239-86794692:-
Coord C1 exon
chr14:86794484-86794692
Coord A exon
chr14:86794333-86794483
Coord C2 exon
chr14:86794239-86794332
Length
151 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCT
5' ss Score
8.16
3' ss Seq
ATTTCCCATCTTCTCGGCAGGGG
3' ss Score
8.19
Exon sequences
Seq C1 exon
GTTTGAGAAGGGCCGTATCTATACCTACATTGGCGAGGTGCTGGTATCTGTGAACCCCTACCAGGAACTGCCATTGTATGGGCCAGAGGCCATTGCCAAGTACCAGGGCCGTGAGCTCTATGAGCGACCACCTCATCTTTACGCCGTGGCCAATGCTGCTTACAAGGCAATGAAGCGCAGATCCAGGGACACCTGCATTGTCATCTCAG
Seq A exon
GTACCTGTCCCAATGAACTGGTTGCCAGAGACACCCTTCATTAATAAATGTGGATGATGGTGCTTCCACATCTGTGGGTTGGACTGGGACAGGGATCTGGGTCAGCGGTACCAAACCCAGCTGGTTCCATCATTTCCCATCTTCTCGGCAG
Seq C2 exon
GGGAGAGTGGAGCAGGGAAGACGGAAGCCAGCAAGCACATCATGCAGTACATTGCTGCTGTCACCAACCCAAGCCAGAGGGCTGAGGTAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059140:ENSRNOT00000092021:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(10.2=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGAACCCCTACCAGGAACT
R:
CTCTCTACCTCAGCCCTCTGG
Band lengths:
255-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]