HsaINT0108641 @ hg19
Intron Retention
Gene
ENSG00000136286 | MYO1G
Description
myosin IG [Source:HGNC Symbol;Acc:13880]
Coordinates
chr7:45016163-45016670:-
Coord C1 exon
chr7:45016462-45016670
Coord A exon
chr7:45016257-45016461
Coord C2 exon
chr7:45016163-45016256
Length
205 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCT
5' ss Score
8.16
3' ss Seq
AACTCTGGTCTTTCCGGCAGGGG
3' ss Score
8.13
Exon sequences
Seq C1 exon
GTTCGAGAAGGGCCGCATCTACACCTACATCGGTGAGGTGCTGGTGTCCGTGAACCCCTACCAGGAGCTGCCCCTGTATGGGCCTGAGGCCATCGCCAGGTACCAGGGCCGTGAGCTCTATGAGCGGCCACCCCATCTCTATGCTGTGGCCAACGCCGCCTACAAGGCAATGAAGCACCGGTCCAGGGACACCTGCATCGTCATCTCAG
Seq A exon
GTACCTGTCCCTGCCGCCGGGCCCCCACCCTCGGCATCTTCATTTGTGAACATTTGGGAGGGCCATTAGAGCATCTCCTGTGCCCTGTGTCCTGATGGGGGCCCTAGGACCCCATCTTGCCAGTCTTGGGGGTGTGAGTGGGCACAGGGAGCTGGGCTAAGAGAGCGAACCTGGCTGATTCTCTCAACTCTGGTCTTTCCGGCAG
Seq C2 exon
GGGAGAGTGGGGCAGGGAAGACAGAAGCCAGTAAGCACATCATGCAGTACATCGCTGCTGTCACCAATCCAAGCCAGAGGGCTGAGGTGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136286-MYO1G:NM_033054:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.075
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(38.0=100),PF139341=ELYS=PU(9.0=9.9)
A:
NA
C2:
PF0006316=Myosin_head=FE(16.8=100),PF139341=ELYS=FE(39.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGCATCTACACCTACATCG
R:
CTCTCCACCTCAGCCCTCTG
Band lengths:
292-497
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)