GgaINT0099681 @ galGal3
Intron Retention
Gene
ENSGALG00000011995 | CLASP2
Description
NA
Coordinates
chr2:44753314-44754124:-
Coord C1 exon
chr2:44753954-44754124
Coord A exon
chr2:44753331-44753953
Coord C2 exon
chr2:44753314-44753330
Length
623 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGG
5' ss Score
7.65
3' ss Seq
ATAGTGGTGGTTGGTGTTAGATG
3' ss Score
1.96
Exon sequences
Seq C1 exon
TTTCGGGCAGCAGCAAGAGTGTTCCAAGCCCAGGAACTCTGCAAAGGTCTCGCAGTGACATTGATGTTAATGCTGCTGCAGGGGCAAAGGCCCGCCATGCTTCTGGACAGACAGCTGGAGGTGGGCGCTTGTCAGCAGCTGGTCTGCCTCCAGGATCTTATGCTTCACTAG
Seq A exon
GTGAGGGAAACATCTTTATTATAATGGGAAATTATTTCTGAGGCTTTTCTTCAAAGAGTTATGGGAAGACAAGTCTACGTTTGAAAAACTGTTATTGTCATTTTTGCCAGAGTGTTGTAAAAGAGCCCATTTTCTCACGTAAGTTACCAACTTTGCCAGATGTTTTATTTTTCTTGTGCTAGAAGAATACTAATGTAAGGAACATATTCATACTATGCTCTTTAAATGTCTTAATCTGGTATTACATTATGTATTGGGAGGGACAATACCTTCACTTAACAGCAGATGGTGATCGTGGTTTTTTTGTGTCCAAAAGTAAACAGGAAATCAGTGCCAGAACTTTTGATTTCCATTTTTTTTTTCTCTTTAGCACTATTGTAAAATGATCAGTTAATGAGACATCCTTGTATTAAGTAGTGGCTTCTTCAGATAATACAAAGTGTTGCACGAATGTGTACAATAGATTTCAGAGAGAGCTTCCAAAGTCCATTCATAAAACTCTGTGAAAGTTTTTTTTTCACCCGAGTGATAATCTTCTTTGTCAGGGAGTGATTGCTGTTAGACATAGAAAGCTCTGCAAATTACAGGTTTGCAGAAAAACTGATAGTGGTGGTTGGTGTTAG
Seq C2 exon
ATGGTAGAACTTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011995:ENSGALT00000019569:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]