RnoINT0036788 @ rn6
Intron Retention
Gene
ENSRNOG00000009161 | Clasp2
Description
cytoplasmic linker associated protein 2 [Source:RGD Symbol;Acc:619789]
Coordinates
chr8:122115123-122119390:+
Coord C1 exon
chr8:122115123-122115296
Coord A exon
chr8:122115297-122119366
Coord C2 exon
chr8:122119367-122119390
Length
4070 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
3' ss Seq
TGCTTGCTCTTTCATCAAAGAGG
3' ss Score
3.34
Exon sequences
Seq C1 exon
TGTCGGTGGGAGGCAGCAAAGCCAGCCCCCTTCCAGGAAGCCTGCAGCGCTCTCGAAGTGACATTGACGTGAATGCCGCCGCCGGTGCCAAGGCGCATCATGCTGCTGGACAGGCTGTGCGAAGTGGGCGTTTAGGCGCAGGTGCCCTGAATCCAGGTTCCTATGCATCACTAG
Seq A exon
GTAAGACAGCTCATTCCCTCTCCTGTGCTCTCAGTGACAACAGAATAAAATGCCACACTTATTTCTGGTTCATTCTCGCTTGTTTGGAATGACCTGTGTACTCGTCAGCCACCTGGTCTGGGCTTGTCTCTGTTGTTTTCCTCCTCATCCTGATCAGACATACTGTTCTTGATTCCACCGGTGCCCGTGGAATTTCCATAACCGCACTGAAGACGAACCTCCCTGGGGGTTACAGAGGGGAGACTCGGGCTTTGAAAACATCTGCTGTTTCCTTCGTCGTATTTCTGTCCCTTTACCTTTGGGGCCAAGGGAGGACTGTAATGGGCTTCTGTGTCTAATCAAAGCTTAGGCATACATTCCAAATGCCGTTCATAGTTGGTTTTTTTCTGTATGTTTTAAAAGTTTAAGGCTAGTTATCCATGTTGAATCTCTGATGCACACTTCTGTTTTTTGCCTCTGGTTGTAGTGCAGAACACTAGCAGATCGGTTACAGGCGTAAAGTAAAGGGCACAGAGATTTGGTGAATGCTAGAATGGTAGTGTTTTATAAGTTGCAACGTGTTACACACCATGTTATAATACATCCCAGATGACCAGACTCTTGAACAAAATTGTAATACAATTTATTGAAAACCTAACAGATAAGAATTCATCTAATCTCACATCACTGAAAAAATTTCCAAATCTAAATACACCATGGTCTTAATTTAAGTCTAATATATGAAATATAAACTCAGAGACTGTTTGTGCCACCCTCCACAAAAAGAAAAACTCAAATAAGGTATAAATAGATCATAAGAGTAAAATAGATATCAAATTTGCCTATAATATGAATATATTGGAAAGTTTGAGAATGTGTTGGACTGTTGATGAGAGCATGATGAACTGGTCCTTGCCACACAGTGCTGAGTCAGTTAGCGATGGCGCATGACTTCTGAATGGCAGTTGAATACTTGAAGCTTTGTTAACTGTTTAGAGTTTGGATCCAGGGCCAGCATGATGGCTCAGGTAAAAGTTCAGTAAGTAACATCCTGATAAAAGGAGAGACCTTATTCTTGTAAATTGTCCTCTGACTTCTATATGTTTTATAGCATAAATAAAATATATAGATAGGGACACGGACAGACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAACCCAATAACTGAGTAATTAAATAATTATACCAAAAAATAAAAGTCTACTTTTTACTCCAGAAAGTGGCCTCTTGTATGCCCTTTGAATCTGAGTGTCTTTGGATTGAAGACATACCCACCACTCTAACTGTGCATATTTACTGCATATGAGCTTGTGCTCTTACCCTGGTGTGGTGCTCTAATGGTGCATACATATGCTCTCGCTGCCACTGAGGTTCCTGACTGCGAATATCTGAGCCTGTGGCACCCTTAAGATCATGGAAAGGATGGCTCAGCTCCCTTTTGGCTCTGTTCTCTACAGTGAGGAGTAGATCCCCTCCTGGTGGAGAAACTAAAAGGCCTCAGCCTCAGCAAAGCTGTGAGGGGTTGGCAAGGAGGGTTCTGTCAACCTAAGGAAATGAAGTAAAAAAATAACTGGGGACCCAAAAAAAAAAAAAAAAAAAAAACCTGTAGGAGGTGGTGGAGGAGAAAGAAAGGAAGAAAAAGAAGGTAGAGGCAGCAAAATAAAAGCAAAACAAAAAGCCAGGTGTCCTGTTGCATGCCTTTAATCTCAGGACTGGGGAAGCATTTTGACCTCTGAGTTCTGAGCCAGCCAGGGTTACATAAGGAGACACTGTTTCAATAAAATAAAGGGAAGTAAGAACAGGATTAGGAAGACGGCTCTCAGTGTGTAAAAGCACTTGCTACACAAGCATGAGGATATGAGTTAAGATTTGAGCACTTGCCTAGAAGCTGGGCAAGGCAGCACTCACCCTTCCTCTGTGCCCACGAGACCCTTTAACTCCGTACTGCTCCCATACTCAACCTGGTTTATCGTGTCGGAACTTACAGAACTCAGGATCACATCCATTTTTCTTTCAAACACTTACTGTATTCAGTTTTTCACAGGTTTCCTGCTAAGTACTGAGGATCTGGAAATTCTGGACTTAGCGATTTTTCAGTTTATTTGGTTGCTGAGAACTAGGGGCTAATGATTTGTTGACTTTCATGCATTGGAGTTGAAACTGCTACAAGACCTCACACTCAAAATGTTTAGGAAACAGTTGAGATGAAATGGGTGCAGAAAGAAAAGGTAACATTATAGTTTCTCGTGCAGTTGCCACTGGTTAATTTGCTGCTTTTTTTTTTTTTTTTTTTTTTTAAGCATTGAATTCTGTGGCACAGAGGTGGCCTGTGTGTTTTGAAATTTACCTAGAAGGCTGGAGAGATGGCTCAGTGGTTAAGAACACTGGTTGCTCTGCCAGAGGTCCTGAGTTCAATTCCCAGCAACCATGTGGTGGCTCACAACCATCAGTAGTGGGATCCGATGCCCTCTTCTGGTGTGTCTGAAGACAGCTACAGTGTACTCATATGAAATTTATCTAGAGGAAATTTTCTAGAGGAAGCTTAGTGTCATACAAAATGGCGTGCGTGCGTGCGTGCGTACTTTGGAGTATAGCTCATGATAAAATGCTTATCTAGCATGCATAGGTATTCTTAATAGAGAATTTATGGAACTGCCTGAATGGAAAAGAAAACAAATGATTTTTAGTAAGGTCAGTTAGAGGAAAGTCAAATTTTAGTTGGTTGTAGAAGAAATTGGCACCAGAGTCTATAAATTTGCCATGCCCGATGGCCAAGAAAAGATGAGAGGCTCTGTAGTTCTCTCAGCTCTGACACTCTCCTCTTCCTTGCTCAAGGATCTTTGTGTGTACACCAAGGTGGTCAGTTAGCTTAGGAAGAAAGTGAGGATGAAGAAAGTGTGTTCTGATGCATGTCCTACAGATGGTGTGAGGTGTGCATGTGTGGTCTGCAGTGAGCAGAGCTGGGAGGCAGCCCTGCTGTGAAAGGCCTGAGCCAGGGTAGGAAGAAATGGGGGGCGGGGCATAGACTCTGGCATGGTGTTTGCAGGACCAGGTGGGTATTGGGAAGAGTGTCTTTGGAAGATTGTGATTGTCTGCCTGAGAGCTCTTGGTCCAAGAAGTAACTAAAGGTTTTGAATAGTCTTGAGTACAAGAGGAGGAACATTGCTAGACTTGGCATAAGGACCACAATTTGGGGCTTGTAGGTGAGGTTTATTAGAGTGAAGGCTACACAACGTAACCAGTAGGGAGAAAGCCTTGGAGGTCTAATGTGTGCTTTGTAGTCCTCGCCCCAAGAGCTAGGCTTAGGAAGAAAGACTCCTCCTTCTGGCATGAAATGCTACAACATGTCAACCAGTGCTTCTACTAGGGAAGCTCATTTAATTAAGACTTCTAGTCCAGGGTGGGGTAGGGAGAGGGAGCTGGTCATATTGGCTCTTTGCTTCCTCAGCAAGCCACAATTATCAAAATTCCAGACACCCAGAAGAAAGTTGGTGCTCACCACAAATCATACTGTTTGCATACGGTTCGGGCTGATTGCTATGGCAGTTGAGAGTCTCTGCTGTCCTGTAACCTTGTTATCACTGGGGCCTTGAGAGCTGAGTTAGCAGGGTCCAGCCTCACACACAGGATCTGCCGGAGAGCAGCAGCCACATGTGGTGGCGCATAGCTGTGACTGCAGCACTCTGGAGGCTGGGACACGAGGATTGTCACACGTGGGCCTCAAAAACAATAGCATTGTCAGTCCTACTATGCTACCTTTCTTGTGGCAGATATTAAAGGCCTGGTCTTCAGTGGTACCACCTGATCACAAGCTGTGTGGGTTTTCGCTAGGAACTTGTGGGACAGAGATAGACGTTTTTACCCAGATGTGTGATTATAGGAGCTGAAAGTTCAAAGGAAAGATAGATCTGTGAGAGGCCAGATGGCAAAGTGAGCCTATACAAGCCAATTGTTGTTTTTTAAAAAATGGGGTGGGGTGGTGGAGATTCTAAAGTCTGTTTCTAATATACTGAGTTTTCCTCTGTTCTTTGCTTGCTCTTTCATCAAAG
Seq C2 exon
AGGACACTTCTGACAAGATGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009161:ENSRNOT00000012545:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]