MmuINT0036754 @ mm10
Intron Retention
Gene
ENSMUSG00000033392 | Clasp2
Description
CLIP associating protein 2 [Source:MGI Symbol;Acc:MGI:1923749]
Coordinates
chr9:113854173-113858604:+
Coord C1 exon
chr9:113854173-113854346
Coord A exon
chr9:113854347-113858580
Coord C2 exon
chr9:113858581-113858604
Length
4234 bp
Sequences
Splice sites
5' ss Seq
TAGGTACGA
5' ss Score
7.12
3' ss Seq
TGCTTGCTCTTTCATCAAAGAGG
3' ss Score
3.34
Exon sequences
Seq C1 exon
TATCTGTGGGAGGCAGCAAAGCCAACCCCCTTCCAGGAAGCCTGCAGCGTTCTCGAAGTGACATTGATGTGAATGCGGCAGCTGGTGCCAAGGCTCATCATGCTGCTGGGCAGGCGGTGCGAAGTGGGCGCTTAGGTGCAGGTGCCCTGAACCCAGGCTCCTATGCATCACTAG
Seq A exon
GTACGACAGCTTGCTTCACTCTTCCCGTCCTCTCAGGGACGAAATGAAATGCCATGCTCACTTCTGGTCCATTCTTGCTTGTTTGCAGTGACCTTGGTACTGCTCTCTGCTTGTCTCCATTGTCTTCCTCTTTATTTGATCAGACATACTGTTCTTGATCCCATGGTTTCCTATAGAATTTTCATAACTGCATTAAAGACACACCTATGGGGGGTTACTGAGGGAAGGCACGGGTTTTGTAAACAACCGCTGTTTCCTTGGTCTTATTTCTATTCCTTTACCTTTGGGGAGAAGGGAGAACTGTCAAGGGCTTCTGTGTCTCATCACAGCTTAGGCATACATTCCAAATGATGTTCAGAGTTGGTTTTTTTCTGTGTTTCAACAGTTTAAGGCTGGTTGTCCATGTTGCGTCTCTGATGCACACTTCTGTTTTCTGCCTCATGGTTGTAGTGTAGAACACTAAACAGATCGGTTACTGCATACAATAAAGGGCATAGAGATTTGGGCAGGGGTTTGATGAGTGCTAGAATGGCAGTGTTTAAGAATGATGAAGTAGGCATAGATGAGTCAGTGCATGCTGTTGAGAAGGTATCTCACAGTTTTTATAAGTTACAACCTGTTAAACACCGTGGTACAATACATCCCAGATGACCAGAATCTTGAACAAAATCGTAAGACAATTTATTGGAAACCTAATAGATAAGAATTCATCTAACCAGCCAGGCAGTGGTGGCGCACACTTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCAAGGCCAGCTTGGTCTACAAAGTGAGTTCCAGGACAACCAGAGAAACCCTGCCTTGAAAAAAAACAAAAAAAATAACCCAAGAATTCATCTAACCTCACATCACTGAAATAATTTCTAAATCTAAATAAATTATAGCCTTAATTTAAGTCTAAGATATGAAAATATAAACTTGGAGACAGTTTTTGCCACACTCCACAAAAAAGTATAAATAGACCGTAAAAATAAAATACTTATCAAATTTGCCTGTAAACACCAGAACAAATGTTGGATTTTGACTGGTCAAACAAATGGAAGTGAAGGGTGTATAAATATACGGAAAGTAGGAGAGTGATGTACCCTGACGAGAGCCTGAGGACCTTGTCACAGCTCTGAGTGAGTTCACAAATGGACCTGATTTCTGAATGGCAAATTAATACCTGAAGCTTTGTTAAAGGTTTGGAGTTTGGATCCAGGACCTGCAAGATAGCTCAGGTCAAAGTTCATCCTCGTTGAAGGAGAGACCTATAGCACATATAGATAGGGACACACACACACACACACACACACACACACACACACTTTGACCCAGTAATTGAGTAATTAAGTAATTATACCAAAAAATAAAAATCAACCTTTACTTCAGAATGTAATCTCCTGTTGTATGCCCTTTCAGTCTGAGTGTCTTTGGTCCAGCTACTTGTGTGCATTATTTACTGAATATGAGCTTGTGCTCTTTTTCTCAATATCATAGTGCGGTATTCTAATGCTACATACATATTCTCTCCATACCACTGAGGTTCCTGACTGCAGATGTCTGTGGAGAGACTGGGGCACCCTTAAGATCCATAGAGAGTCCTGGAAACTCTAGGCTCAGCTCCCTTTTGGTTCTGTGATCTCGAGTGAGGAGTAGATCCCCTCACTGTAAGGGCTTGGCAAGGAGGGTCTGTCAGCCTAATGAAATGAAGTAAAAAGGAACTGGTGACCTAAAGAAAACACAGAAGGTGGAAGGAGGAGAAAGAAAAGGAAGAAAAAGAAGGTGGAATCAAGTGTACTGTTGCATGCCTTTACTCTCAGTACTGGGGAAGCAGCCAGCCAGGCTCCATAAGGAAACACTGTTTCAATAAAATAAAAGGAAGTAAAAGCAGGATTGCGAAGATGCCTTTCAGAATGTAAAAGCACTTGCTAGACAAGCATAAGGATATGAGTTAAGATTTGAGCACTTAGGGTTGGGGAGATGGCTCAGTGGTTAAGGGCACCAACTGCTCTTCTGAAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTTACAACCACCTGTAACAAGATCTGATGCCCTTTTCTGGAGTGTCGGAAGACAGCTACAGTGTATGTACATATACTAAATAAATCTTTAAAAAAGAAAAGAAAAGAAACTGCAGCACAGCACCAAAATAAATGAATGAATGAATAAATAAATAAAAAGTTTGCGCACTTACCTAAAAGCTGGGCATGGTAGCACACACCCAACCTCTGTCCTCATGAGACACATGACTAGTGGGCTCTGCTTTCTTCTGTATTGAACCTTGTTTATCATGTCTGAACTTAGAGAATTCAGAATGAGTATATCATTTTTTTTTCAAACACTTCCTGTATTCAGTTTTTCCTCAGGTTTCCTGCTAAGTACTGAGGATCTGGAAAGTCTGTACTTTTTTTTTCTTCAGTTTATTGGTATGCTGCTGAGAAATAAGGGGCTACAGATTTGTTGACTTTTGAGTTGAACTTGCTACGAGACCTCAAACTCAAAATGTTTAGGAAACAGTTGAGATGAAATGGGTATACAAAGAAAAGGTGACATTAAACTGCATACACTCTCTAGTGCACTTGCCACTGGCTAATTTGCTTTTGTTTTTTTTAAAGCACTGAATTCTGTGGCACAGAGGTGGCCTGTGTGTTTTGAAATTTACCTGTTAACTTTTGTAGAGGAAAGTTAGTGTCATACAGAATGGCCAGGGTGTGTGTGTGATTATATTGGAGGTGTAGCTCATGATAAAATAGTTACCTAGCATACATAAGTATTCTTAGTAGGAGGTTTATGGAACTGCCTGAATGGAAAAGAAAACAAATGATTTTAGTAAGGTCGGTTAGATAAAAGTCAAATTTTGGTTAGATGTGGAAGAAATTGGTACTGGAATCTATGAACTTGCCGTGCTTGATGGCCAAGAAGAAAATGAAAGAGCTCTGTAGCTCCTCTCAGCCCTGGCACTTTCCTCCCCCTCCTTGTTTTAAGATCTTTGTCTGTACACCAAGGTGGTTGGTTAGCTCGAGAAGAAAGCAGTGAAAGGATGAAGAGAGTGGCCTGGTGCAGCTCCTGCAGAAGCTGTAAGGAGTGGGCTGCAGTGAGCAGAGCTGGCAGTGAGAGGGCAACAGTTTCCTGAGCCAGCGTAGGAGGAAATGGAGGGCAGGGAATAGAGTCAGGCATGGTACTTGCAGTACCAGGTGGGTCTTCAGAAGCGTGTATTCATTAGAATTAGAATCGTCTGCCTGAGAATTCTTGGTCCAAGAAGTGACTAAAGGTTTTGAATAGTCTTGAGTACAAGAGAAGGGACATTGTTAGACTTGGCCACAATTTGGAGCTTATGGGTGAGGTTTATTAGCGTGGAAGGCCACACAGCAGAACCAGTAGGGAGATAGCCTTGGAGGCCTAGCGTGTGCTTTGTAGTTCTCACCCTCGGAACTAGGCTTAGGAAGAAAGACTCCTTCCTCTGCTATGAAATGCTATAACATGTCAACCAGTGTTTCTGCCAGGGAAGCTCATTTAAGACTTCTAGTCCAGGGGTGGAATAGGGAGAGGAGGCTGGCCATATTGGCTCTTTGCTTTTTCAACAAGCCACAATTATCAGAATTCCAGACACCCAGAAGAAAGTTGATGCTCACCACAAATGATACTGCTTGCATATGGTTCAGGAGATTACTATGGCAGTCGATCCTCTGCTGTCACGGAACCTTGTTATCATGGGGGGTGGGGGATGGGGGTGTTCGGAGCTGAGTTAGCAGAGGCCAGTGTTGCACACAGGACCTTCAGAAGAGCAACAGCAAGCACACATGGTGACGCATAGCTGTAACTGCAGCACTCTGGAGACTGGGACAGGAGGTGTGTGACATGTGGGCCTCAAAAACAATAGCATTGCCAGTCCTACAATGCTAACTCTCTTGTGACAGATAGTAAAGGCCTGGTCTTCAGTGGCACCACCCGATCACAAGCTGTGTGGGTTTCCTCTAGGAGCTTGTGGTACAGAGGCAGATTTTCACCCAGATGTGTGATTATAGGAGCTGAGAGTTCAAAGGAAAGATGGGGTCTGTGAGAAGCCAGATGGCAAAGTGAGCCTGTACAAGTCACTTGTCTTTTTAAAAAATAGGGATTATGAAGTCTTTTTTCTAATATACTAAGTTTTCCTCTGTTCTCTGCTTGCTCTTTCATCAAAG
Seq C2 exon
AGGATACTTCTGACAAGATGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033392:ENSMUST00000111838:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types