HsaINT0035756 @ hg19
Intron Retention
Gene
ENSG00000163539 | CLASP2
Description
cytoplasmic linker associated protein 2 [Source:HGNC Symbol;Acc:17078]
Coordinates
chr3:33638203-33644617:-
Coord C1 exon
chr3:33644444-33644617
Coord A exon
chr3:33638227-33644443
Coord C2 exon
chr3:33638203-33638226
Length
6217 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
3' ss Seq
TGCTTGTGCTTTCATCAAAGAGG
3' ss Score
3.03
Exon sequences
Seq C1 exon
TATCAGCAGGCAGCAGCAAAGCCAGTTCCCTTCCAGGAAGCCTGCAGCGTTCACGAAGTGACATTGATGTGAATGCTGCTGCAGGTGCCAAGGCACATCATGCTGCTGGACAGTCTGTGCGAAGCGGGCGCTTAGGTGCAGGTGCCCTGAATGCAGGTTCCTATGCGTCACTAG
Seq A exon
GTAAGAGAACTGATTATGGAAAATTGTACCATGTTCTCTCCCTGATCTCTGTGAAGACAAGTTCATATACCTTAATCATTTCTATTCATTCTTGTTATTTAAGGATAGTCCATATGTTTTAATATAATTCTATATTGCGGACACACTTCTGAGGAATCTGAGCTGCCTTGTTTCTCCTTTTCCCTTGTTCTCATCATCGTCTTGATCAAAGAAACAATTCTTGAATCCATGATTGCCTGTAGAATTTTCATAACTGCACTTCTACCACATCTAGCCACTGGTTTCTAAGGGGGTTTGGGAAGGGAATTGGCTTGTATCTAACTTTCCTGTTTTCTTTCTCCTACTTCTCTTCTCTTACCAAGAATGTGAAGCCTTTTGGAGATCTGGGAGAACTGCAAAGCTCTACTCTGTCTAACCAAACCCTAAACATATATTCCAAAACTCTATTCAGTTTGATTTCTTCATGTTTTTATGTCTATCAAATTAAAAAGTTGACGTTGGTTTGCGTATCTCTTCTTCATGCTTCCATTTTTTTCTTTTGGGTAGTACTGCTGGAACACTAAGCAGGCAGATCGCCAGAACACAATACAGGTTGAGCATACCTAATCTAAAAATCTGAAATCTGAAATGCTCCAAAATCTGAAACTTTTTGAGCACCAACATGACACTCAAAGGTATTTTGGACTGAGGCGGGCAGATCACCTGAGGTCAGGAGTTCGTGACCAGCCTGGCCAAAGTGGCAAAACCCTATCTCTACTAAAAATGCAAAACTTAGCCGGGCATGGTGGCTCATGCCTGTAATCCCAGCTACTTGGGAAGCTGAGGCAGGAGAATCACTTGAACCCAGGAGGCAGAGGTTGCAGTGAGCCAAAATCGTGCCATTGCACTGCAGCCTGGGCGACAGAGTGAGACTCCGTCAAAAAAAAAAAAAAAAAAGGTATTTCGGATTTTGGATTTTTGAATTAGCAATGCCTAGGGATGCTCAGTCATTTAAGTATGAATGCACATATTTCAAAATCTGAAATCTAAAACATTTTTGGCCCCAAACATTTTAAATAAGGAGTACTCAACCTGTTAGAAGTGCAGAGAATTTAGGTATGAGTATAGTGCATGATAAAGTTGGCACAGCTGCATTCAGAACCGTGAAGAGGAATAGATCATTCAGTAAATTGTGTTTAGACACATGGTTTACAATCTGGTATAAAATTAAGTTAGAACCATGTTACACACCATATAGAAATATATTCCAGATGATAAAAACATTAAAAACATAAAGCAACTTGATGAAAACATAATAGGTGAGTATTCATCAAATCTCAGGTTGAGACAGGAATTCCTATACATAAAAGCAAATAAGCCATGAAGGAAAAAAATCTCTTGAATTTAAATCTAAAGTATGAAAATATGAAATCTTAAGCAAAAACTAAAAGGGAAAAATATTTTGCCACATAGTAGTAAAAAAGTTAAAATGTTGAGGTTTTTCAAGTCTGTTAAAAACAGATGAGCTTATTTTTATAGAAAAAATTCTACATATATCAAGAAAAGCATATGTCAAAATGGCCAACAAATACCAGAATAAATGTTGAACCTTAGCTATAATCAAACAAATACAAATTGATAGACCTGTAACTATAACACAAAAGTTAAGGGTAGTGCCCACTGTTTTCAAGAATGTGGTAAAAAGGGCCTTATCGCCGGGCACGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGACAGGTGGATCACGAAGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACACCGTCTCTACTAAAAATACAAAAAAAACTAGCCGGGCGTGGTGGCGAGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGGTTGCAGTGAGCCGAGATCTTGCCACTGCACTCCAGCCTGAGGGACGGAGCAAGACTCCGCCTCAAAAAAAAAAAAAAAAAAAAAAAGCCTTATCAAGCAACACTGATGTGAATTAGTGATGGGACACTTTTTCTGAGTTCCAATTTAGGAATTCCATGAAGCATTTTTAAATCAGAATGTTTGCCCCAGTAATTCAATGTTTACATAATTATGTTTTTAATAACGTTATTAGCATCAACCTTAATGTGTAACAGAGGGGATGGTTGAGTTATATTGTATCCTTATATATGTTGTGCAGCCATTAGCAAGTCATATTTTCAACAAAGGTTGAATTATGCAGACTACCAAATAGTATGTAGTAATTTCATCATTTTGTGTAAAATTATACATAGAAGAAGGACTGGTGTGATATATACAAAGGTGTTAACAGTGTGTTGATTACTGCTTTTAATTTTCAGAAAACTTTTTGTTTCAAAGCATTACATTGCCAAGAATGCAAGGTTATTTCAGTATGTGAAGACCAGTCAACAAATGTACCATATTAATAGAAGAAAGGACCAAAACCACATGATCATCTCAGTAGCTGCAGAAAAAGCATTTGACAAAATTAACACCCTTTCATAATAAACATACTCAACAAACTAGGAACAGAAGTCATCTTTCTCAACCTGATAAAGAGAATCTGAAAAATCCACAGCTAACATCCTACCTGACGATTAAAAAACTGGATATTTTTCCCTAAGATCAGTAACAAGACGAGAATGTCCACTCTTGGCCCTATTTAACATTACCTTGAAGTAATGTTAAATTGGAGGTGCTAGACAGGGCAATTAAGCAAGAAAATAAATAGAAGGTATCCAAATTGGAATGGAAGAACAAACTGTCTCTCTTTGCAGAAAACACAATCTTGTGTTTAGAAAATCCTAAGGAATCCACACACACACACACACAAAAAAAATATATATATGAGCAAAACACATTACATTGAATATCTATTATTTTTACCGAAGAAAAATACTGTATTTAAAGTGCTTTAATGTGCACTAGAAAGCCAATTTGGGACAATTTTTTTTTGTGAGAACCTATTGTTGTTCTTTAAGGTTTGAATTTCATGTTTCATTGTAAAAAGGAGAGTGCCACTACTTTTTTCTTTTCTTCATCTGACCCAGGTTCCCACTCAGGGACAATCAGCTACCTGCCTGCGGCTTTTTCAGGGGTTGGATAAAGGATGTTCTCCTTCTTACCCTCCTTCCCTTTCTCCCTTCACCCCACCCTACCCGCTGTGTCTCATGTACCCTTCTTACACACGTAAGACTGATATAACCTCTGTTTTCTTCTACTTTGAGCCTCACTTATGGCTATACATGTATGAATTAGAGGGAGTGTTCTGTTAGTTTTCAGCACACACTTGAGCACTTAGTTTTTGCTAGGTACCAGGGATCCAGAGGTATATGCTTCTATACTGAATCTCTCTCAGTCTATTGGTAGGTTGCTGAAGGATGAGCAGCTAAAAGTTTGTTGCGTTTTATGCATTTTGAGTTTGAAGTCCCTGTGAGACTTCAAACTGGAAGTTTTCAGTGGACACTTGGTATATAGTAGTATAGAACTTGGCAGAGAGGCCGGCACAGTGACTCAACACCTGTAAACCCAGCACTTTGGGAGGTTGAGGCGGGTGAATTGCTTGAGCTCAGGAATTTGAGACCAGCCTGGGCAACATGGCGAAACCACACCTCTACCAAAATAAAAATTTAACCAGGTGTGGTAGCACATGCCTGTGGGCCCATCTACTAGGGAGGCTGAGGTGAGAGGATTGCTGGAGCCCAGGAAGTAGAGGCTGCAGTGAGCCGTGATCACACCACTGCACTTCAGCCTGGGTGACAGAGCGAGACCTTTCCACGTTCTCCAAAATAAATAAATAAATAAATAAATAAATAAGACAACAACAACTACTTAGCAGAGTGATGATGATTAGATTCGATTTGGAAGTCATTAGATGATTTTACTTACTGTAATCAATATTAAACTCAGAGCATTCCTTCTTAAAGCAGTTGCTACTGGTTTTTGTTATCTCTAAAGTACTGAATTTTTTGGCAGCAGGGATATTTTAAGTGTTTTGAAGTTCACTCTTTAACTTCAGCCTGAAGAGGAAACTTGGTGGTAGGAAACAGGAATTTAAGTTAAGGTAACCTTGATGTTTGAGTACATATTTATGAATATTTATTCTAACAATTGAGTTTATGGAATTGCTTGAGTGGAAAAGAAAATATAGTTTCAATGAGGTCATATGGACAGAAGTCAGATTTTAGTTGGTTGATATAGAAGTTGGAAAGAGAATCTGTGTAAATTATTGTTACGCCTGACGGTCAAGAAAAGGGGTGAAAGAATGGTAGGAATTATCTGTGGTTGAAAGAACTTATCATCTTATAAGATTGGAGAAGTTAATTATGTTTGTATCCTAAGGTGGCAAGTCAGTAGAGATGGAAAAGTTAGAAGTGTAAGGATGAAAGGAGATAATTAATAGCTAAGTTGCTGTGGAAGGTGTGAGGAATGGGATATGGAGCATAGCCTGGGAGTTAGTCTTGAATGTGGAAGGGTGAGCCATTTCACAGATGTAGAAGGGGAGGAAGTGATGGAAGGGAAGGAATTGGAAGAGGTAGTAGATATCAGATACGATATTTTGGAAAGTTGGACATTAAGAAGAGTGTGATTGGGGAGGTTGTTGTGACTTTCTGCCTGAAGATTCAGAGTCAGGATCATGTGCTAACAGGTGACTTGAAGTTTAGAATAGCCATTTGGGGAGAGTAGACACAAGAGGTGGGGCACTCATGGCTGACATTTGTTAGAGCAAAAGGATTTATTAGAGTGAAAAAAAAAAAAAGACCTGTGAGATAGTCTGAAGGAGTCTAGACGCAGGCTTTCAAAGTTTGTCTCCCAGAGCTAGGGTTGAGGGGCTACTCCTTCCTCAAGCAATGAAATAGAGCAATGTGGGCTGGGCACAGTGGCTCACACGTGTAATCCTAGCACTTTGGGAGGCCTGGGTGGGCAGATCACTTGAGGTTGGGAGTTTGAGATCAGCCTGGCCAACATGGTGAAACCTCGTCTCTACTAAAAATACAAAAATTAGCCAGGCGTGGTGGCACATGCCTCTAGTCCCAGCTACTCGGGAGGCTGAGGCACAAGAATCACTTGAACCTGGGAGGTGGAGGCTGCAGTGAGATGAGATTGTGCCATTGCACTCCAGCCTGGGTGACAGGGCGAGACTCTGTTAAAAAAAAAAAAAAAAGAAAGAAAAGAAAAGAAATACAGCAATGCAACATGTTCACAGTGTTTCTGCCCAAGGAAGCTAGCTTAAGACTCACGCTGGGGGGCCAGTAGGGGATTGGCACTCTGCTTGCACAGCCAGCCACAATTAGGCACATAAGGCACTCTGCTTGCACAACCAGCCACAATTACCAGAATCCCAGACTCCCAAAAAGAAAGGAGGTTTTCACCATAAACCACACTGTTTGCAGAAACAGCTTAGGCAAACTGTAGCAGAGTTCAGTGTCCCCACAACTTCTGCACACACACTTAAAATAACCTTATCATTAATACAGGGAGGATCCAAAACGATTACCAGAGGCCAGCCCCACAAGCATACACTTCTTAAGAACAATATCAGTCCTGCTATGTTAAATCCTTTTAGCACAGGCACTAAACACCAAGTCAGATATTTATTCCAGTTTCTAGTAGTGCCAGTATGCATGACTTCATGGTTGTGTAATTTTCTCTATGGGACATCTCAAGTAATAGAATAGAGAAAGTGAGTTAGATTCATCCAGATGTGAAATTTTAAAGGGGCTGAAAGTTCTAAGAAAGGATGTGGGTGGGGAAGCAACGAGGTGGTAAACAGAGGCTAATGATGAGAGGGCCTAAGTGTGGAATTTGGGGGTATATTATAGGCAAGAGAGAAAAGAAACAAGGCAATGTGACTGTCTGGGAAAAACTCACAGACTAGAGCAGGGGATTGGCATGATGGCAAAGTCCAAAGCTGGGACATGGGCCTCACTAACTTTTCTCTTTTTAGGCTAGTGAAATAGACTCATTATCAACTTTTAAAAAATTCTCTACTTAGTACATTAGGTGAAGTCTTTATCTCACATCTGGTTTAATTTCCTAGTCTGTTTTAGTTGAAAACAAGCTTGATATATACGTCTGTACTATGAATTCTGTCTTCTTAAAGAAAATGTTTTCTAGGAATTATAAAAATCATTTCTTCTAATATACTAAGTTTTCCTCTGTTCTTTGCTTGTGCTTTCATCAAAG
Seq C2 exon
AGGATACTTCTGACAAGCTGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000163539-CLASP2:NM_015097:18
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.979 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)