GgaINT0102641 @ galGal3
Intron Retention
Gene
ENSGALG00000007928 | MLLT10
Description
NA
Coordinates
chr2:17867900-17877342:-
Coord C1 exon
chr2:17877310-17877342
Coord A exon
chr2:17868079-17877309
Coord C2 exon
chr2:17867900-17868078
Length
9231 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
3' ss Seq
ATTTTTGTAATTTTTTTCAGGTA
3' ss Score
10.92
Exon sequences
Seq C1 exon
CTTTCTCGAAGTTGATGAATACCATACATAATG
Seq A exon
GTAAGTTATATTAGAATCTTTTTCAGAGGTTCATTTATCCCAAAGGGTAGCCTTTTGTAGAAAATCCTGATTGAAGGTCTGCATATTCTATTGATTGGGTGAAATACAGGTCTGCAGTGAGTCAATTGTTCAGTACTTGAGTGAAAACTTTGTAGATTGTCTGCAGGAGCCTGATAGGTCAATAGTTCCTCAGTTCTCTTTTTATGATCTTTTTGTATGTGTGCAGTAAAATGATAACAGTTTTATTCTAGTTCTAAGATTCTTTTCTTTAATTTTGTGAATAGTGTTTTTAGTTCTTCTTCTGTGCTCCATTCATAGGTGTGTTATAGTGGTATCTGCCTCAGGAATTCTCTCACTTACCTTCCTGACTACTTAAATTACTACAAGTAATGCATGTGAAGGTATCCTTGTTTTGTCCAATCTTTGTTCTGGCAGCCCAGTGCTGCCATTTGTGTCACTGGTAACAGTACTATCAATTTCAGAGGGGCAATATCGAATCTTTAATGTATCTGATTGCAGTTTCCCGCTGGTATTCGGTATTGGCTTTGTGTCCCTAGTTGTGTATTCACTCATAGCTCGTGGAAATGAAATATATCTTATTAAATTTACTTTTTCAAGGCTTTTGTTGTTTTATAGGAAACAGTCATAGCTATATTCACAAGGTACTGAAAGATTCAGTGGGAATATTTACAGTTAAAATGATCTCGTGAGGATAGTTTTAAAGATGATCAAGTGTATTTCTCAGTGTTGCATTTAAATGGTGGCAGGCAATCTAGTAATGAACTTTGGAGTTTTTTTTTCAATCGATATCAGCCATTTAGAATGATTTTCTTATTGTTGTCCATGTATGTAGGAAAAGCAGTGCTGTATTCATTGTAAATTCTATCAGTGTGGAATGCAGCGTATCCAAAAGAAATTAAGTGTTTAAACTTTGCATGTTGAAATTCTTCACATCTTAAGCTAGCATTCATTAAAATTTTATAGGACTTCTGCTTTTCACACTGCTGGAGGCATGGATTACATGTTAGGCAGATGTCGGTAGTGGTAGGTCTCTTTAAAAATAAAGAAAGAAATAAATAAATTGTAGTCTACATGTCATGAGAAATGCTGAGATTTCTCTAGGTTTACTTTGCTTTAGTTAAACAGGTTTAGCTTTTTCCCTTTTGATATAGGGTTTCCCTCTCACTCTCCCAGGTGTACAGTGCTCTGAACCAGCTTTGAGATGAAGGAAAGCAAGCTCACCATTTTTCTGAACAAAAATAAAACATCTGAAGGGTATCTGAGAAAGTTTGCTGAATTTGGACTTGGTGAGTTTCTGCTGTTTTATAAGCAGAGCTTTTTTGCTGTTTAATGTTGAAGAGGTATAAGTTCACAATGAAGTGCAGAGTAAAAATGGATGCAACACGACTTGTCATTACTTCTTTCCACATTACAATACTTTTTAAAACTGTTTGTGTATTCCTAGCACAAGTGTAGAAGTTCAAACAGCATAGATGGAAAGTGGTTACTTAATACTGTAAGCTTTCTTGTCAAGCAGTAACAGTGCTTTGTAGGAACGCATTGTGGGACAGAGTAACATTACCTACATGTTTGTTTTAGAACAGGACAGAGTTTATCATCTGATCTTCCTGGTATGCATGGGGCTATGCATGTATGTGTTATTTACCTTCCCATGTTTCCCTCAGTAAGATTTTGAAGTTGCTTACTTCCTTCCTCCTCCAGCCTCATTTTGCAGGAATGTTTTTGCATATTCTTCTTTGGGTAGAAGTGTGTAGGAATGAAAACAATGAGGGTAGGTAGAGATCTTGGTAATGCAAACAGTAAGGAAAGATTGTGCCATGTGTACAGGATGAAAAGAAGGCATTAAAACTTGTGATAAATATGAGATTGTGAGTCAGGTAATGCTGAGGACTGTCTGCGTTGTCTGTATGAGTTTTGAAGGAGGTGAGGTATCAGGAGCTCATTTTTATTGCACTGAGTTTTCTGACTGCACACGGGCAAGAAAGTACCAAAAAGAAAAAAGGAGAGTTAGGGTTTGAGTAGAGGCAAATACAAATTTGAAACAGAGAGGTTCATTTGATAGCTGTGCTTAATATAAAGGTGATGGTTGAAGTCAATGAGTCGAATTTGGTGCTGACCAAGAGTAAAGGAGGAAAGATAATAGCAAAAGGCTTGGACACATGAGAAAGCGTCAATTAAAAAGGAGGAAGAGAAAATAGGGTCATGCAAGCTGTGACTTCCAGTAAAAATACCTGTGTTAGTAGAGGGCAGTCAGGGTACGTGAAGGCAGGCAAACACTTCAGTTTTAGCAGGAAGAGACAGTTCTGTGGTTCTTGGTTTTGGCAGATAATTCAGGTCAGTTTTCTGTTGGTTTTTCTTTCTTCTTTTAATAAATATATGTATGTTGTTTAAAAAATCTCTGATTGCGCTGCTATTCACTGTGTGATAACTTTGTGCTTTGTCTTACTCTGGACAGTCAAACTTTTTTATTTGACCTTGAAGTCTCATCTATTCTGCGTCATCTTTTATCACTGGAAAGCAGGAGGAGGTAATGCAGGCATACGTGTCTGTTGGGGATTTTAGAGCATACTAAAGACTGTGGGGAGTGATGACCTGACAGTTGTAATTTCATGTTAGAGCTAGCTGTAAATTGTAATGGTTGGTTGTAGGCTTTCTCTGGCTACTTTTGTCCTTACTTGTTAAGTCTGCTCTCTTGTTTTATTTCTTATTCCTCTTCCTGTTTTCAGGTCTGTTTTCATGTGTTCCATCTTACACTGTTTTTTGTGTCACAGTGTTGGCAGTTGTAGCACAGAACAGACAGCAGTCAAGCTACTTGTAGCACTGTGATCATCTTTAGGAGGTAGTATGTTTGCAAATGAAGTTTTCAGCTCTGCACACTCGGCATAAATGCTGGCAAATATTAACATATAAGATATGATATATTTTTTTAAGAGGACAGATTACACCCAAAGAGTGTAATCTACTACTGTAGTGTAACTTATTACTGTAGGCTGTAGTATTTAAAGGAGTTAAATACTCTGTATTCTGTTAATAGTGAGGAGGAATATAGTGTTTCCATTGACTTGCTGTTCCAGCACTAAGATTGATTCCTGTCAGACTGGTTTGAAGCTATGGTAGGTTTTCAGGAATCTTAAGCTAACATGTTAAGCTCTCCCTCAGGATTTCTCTCGACTCAGATCACAAATGTCATGTTCTTACTTGGGAATACTTGTTTCGTGGAGCCAATACTACTTTTAGTAAAAGCCATATTAGAGTAACTTAAACTTTTATGTCTTGGATTACCACGATTAAAGTGAATATATAAATAAAGTTACAGATTTTATTTATCAATTATTCTTCTGTATCTGTTTTTTTTTTTTCCTTGCAAAGATCTTTCATTCACTGCTTTTACGTACTTTGAAGTTCAGATCTTTTCTGTATTCTTGAGGATACTGTCTCACATCTGACCACGCAGCTCTGGATCTTACTGATCTTTTTTACAAGAGTACTTAAAAAAACCTGTTGAATCATACTAGAATAAAGATTGAATGCTTAATATGTTTTATTCAATAAAGCTGAATTAGTTATAGATGTGAATCTTAAGCCGACTGTTATGAAGCATCTCAAAGATTTATTCTGGAAAATCAGAACACCTGGAGGTTCATGATTACAAAGCAAGTAAATAATTAGGAAACTTTTCTTTGGAGTGATCTCTGCTAATGCTTTCATTGGGACTATTTTTTATATAGCTATCATAGCACAAAAGTGAACAGGGAAAGAAAATTAAGATATAGGAGGAAAAGCTTGTGTAAAATTAAGCATGACTTATGCTATTAACTATTAAAGATGTTTCCGTGTAAGAATAAAGGCCAAACCAATACTACCCTAAAATTAGTAATCACTTTATTATCTCAGAATTTTGCACTTTGTTTCAGTATGTGATGCTGCAATATAACATATTGAACTTGATGGCACCTGGAACTTATGAATGATTGCATAGGTTTTAGTGGTGCCAACTTTGAACCAAGATGACCCCATTCCTTAATGACTTTTAGCTCGGCCCTAGAGCATATTTCTGGAGGCCCTGGAGGGGTACAGTGAGTCTGTCATGTGATCAGACTAATGGGATAAGCTTTGGTTTCCCAGCCTGCCTGTGCAAATGGGCTGTTCCAGGCATGTGGTAGAGCATGTGGTAGACCGTGCACCTCTACTGTAAGTATGAGGAAGCAGTCTGCACTGTAAGAAACCGAAGGTCTGACTGAGAAGGCAAAGTTACAGGGGCTGAGAATTTAGGAGAATCCATTCAGCTAGTAATTCTGGGTGGCTTTGGAGAGATGAGGCAGGAATGATGCACTTTGGTTAGGCACTGATATGTCTCGTGTGTGTCGCAGCAGTACGTGCGGTACCGGGTGGAAGCACAAGTCAGAACAACATACTCTCCTCTAACCTGTTTGTTGAGGAAAAGGGAGAAATTCACTTGGAATTTCTTAAAGGTTTCAAAACCCTCTCTGGAAAGGTAATTGTAACCTGTGTGCCAACAGGCATACTTCCACTTTTCCTGCTGTGACATTTCAATTCTTCCCACTCCTCACAACCCATTCTTGTGCTGGGAGCCTTTTCCCCAGATTGCCTTCAATTCTTGTAACTCCTCCATCGTTAATGTTTCTTACCTGTGAAAATCCGTCTGCCAGAATGACTCCTGCACAGTCACTGGTAGCAGCACCCTGTTGTTGGCATCCCTCTTCCCACACGTGCAGTCTGTCTGTGGTACAGCTTTCCCACAGGACACACAGTGGGAATTTACATTGGTTCAGAGAGGGTTGCAAGGAATTCACTGGGACAGAGCTGGAAGCAAACCCAATGCTACATGCTTCAAGCTCAGAATCCCAAAATCATAGGGTTCTAAAAACTGGGAGATTATCCAGAGGAGTCTTACTTCATACCTACCCTTTTCTTGAGCCTTTCTGTGTGAACTGCTGTTGGTCACAGTAACTGGTTTTTATTTGCTTGTGTTTAGCATTAGGTGCAACTAAGCTTATATTTCATCTATATTGCAAATTAATGACCTAGGTGATAATTCTTCCACAGTTAATGTTCTATTAGAGCATGTTCTTGCTTGTTTAAAATAAATAAAACTTGGTTACTAATCAACAGACAACAGCATTAAAGGGCACTTTCATTTTGTCATGGCTTTGGAGTTGATTTCTTGAGATCATCGCAGGAAATGGAAGTACTGGAAATGCATATATAGGTTCCTTTACTTTCGTGAAGGAGTTCTTGTTCTTAAAACACGAAATTTCCTTTGATTTTTGTGAGCTTTGCTGCATGACTGAAGTTTATTCCCTCTCTCCCCCATTCTCCCCAAGTAGGAAGGCAAATCTATGGTTCTGTGCAACTTCTGTAAATGTAAAAGTTTACATTTTTAAAAAAACCTTTTGACTAGATTAAGCTATTTCTTAAGCTTTTGCAAAATACTAAGGGCACCAACCTATGGTAGATACTGCAGGTAAATAGAATAGTTACCTGGAAGGAACTTTCACACTGCAATCCAGCTGCAGCTACATGGGTCGTGGTGGGGAAATGTGGGTTATTGATGCAGCGCTGTTAAAAGTGAAAAGTTCATCTGATTTGTTAATTCTTCTGCTCGTGGAACTACTTTTTTGAGGTTTTTAATAAGACCATTTAAATTGCTCTGTGTGCCTCTTGACGCATGTTGCTGCACAGCTAGTTCTCACTAATCTTGATGTTCTTTTATTTCCTCTGTTATCTATTCCATCATTGATTGTCAGTGAAACGATTGCAGTTTCTCCCAATCTGCATCATCTGATATGTTCCCTGCTCTATATTAATGTGCTTCCTTGCTAAGCAGGCAGTTATTTCTTGTTCAGAGATGGTTTTGTTTTGTTTGTCAATTGCCCTTTTGTTAAGCATTTTGCTCCAGCAGTGCAGGCTGTACATGCATTTAATGTCTCAGAACCTGAAATCATGCTTTGCATGTGTCAGCAGTGGTCAGCTTTGCCCTGACAGTGCTGCACGTCCACGTGTAGTTGAAGAATTGGGTACTATTAAAAACACTGAAGATTGTATTTAATCATGCTGTTTATGCCTCTGGCAAATGGCACAGTGCCATTTGTCACAAGTTACAGCTGTTTAACTTTTCTGTAGTATGGGGAGGACTTCAGGGTGATTGGTTTGTTTGGCACTTGTAACTTTGGTTTATGTTCAGTTATTATTCTTCACTGATTCAGAGTGATTTTTCTCCCTGCAGAGAACAAAAGGACAACTTGATAGACTTGAGACATTTTACATATGTACTTTCCTGGCTTTCTGATACGATAAGCACTTAGTTTTTGTACAACTATTTTTGAAATGGGGAAATAGGGGATTTATTTGTGTGTGCTGCGTACAGTTGTTTGAGTGTCTGCATGAAGTCTTGGTTGTATGACTGCTTCCAGAACATGAGCAGACTTTGTGTTTTAAGTAAGGTATTGCTAAATGGAAGTATATAGCCCAGAGTATCTGGACAGGTGATATTTTCTGGTGTTTTGCAACAGTAACAAATAGCAAGTGTTCAAAAGCAAACAAAGCAGTAATAAAGGCAAAAAAGAAGCAGCAGCAGCTTACCTCATTGCGATGGTGAACTGGTTTACTGTTTTTCTTTAGAAGTAGTTTGATGCCCATGGTTTTATAATATCTGCCTGTATACCAGCAGTTCATTTTCAAGAGGAAGAATAAACCTTGCAATTACAATAGAAGCAGCAGATGCCTGCAGTTATTTAATATATAAGGTTCTGAAAATGAAGAAGCGTTTTAAAATAGCATGCTTTAAAATTTGGGAGCTTTTACCTTTCTGGCAAAATATCTCTTTTTTACAACTTGACTTTCACCAAGAATTTTGTTTTCTCCACTTGTGATCACTGATGCTTTATGAGACCAGTAGCACTTGTAGTGACTAGCTGTTGTGATTTGGTCTGTGCTGTGCTGTTTCTTTACCCTCAACTTTAAAATTCACAGGTCTGGATAGTTAATGTGAGAGTCTCATCATTCTCAAGAAGTGGTGTGGATTCAATTGTTTTAGGGATACTTTCAAAATGTGGGATATTGCATTTAAGAATAGGCTCAGTAGCAAGACTGTTTGTTAACTGTGTTCGGTTGGTAGTGTGTAGAGACAAATCTAGAGCAGAATCCCTGTGATTTACTGTCTGTGAGTTAGGTGAGGCAGATACAATTGAAGAAGGGTTGTAATGGTGTGGACACTTCAGGATCTTAACTGTTAGTAATGTCATAATTGTAGACTTGGGGAGTGGTGACAAAAAATAAGGGAAAGATGACCATGAAAAATATGCTAAGTAGAAGAAGGAAAGATAAGAAACTCAGCAGAAAAGTGGAGCAGGTATGGAATTGTGCTATGAAGAGGTTGAGGAGAAGATTGCAAGTCCTTACTTAACCTAGCTTAGATAGAGGAGCTAATGTTGTCAGCATGTCTGGCTGTTTCTCATCTCTCCTTTCTCTGCTTGGTCTGGCTACTTTTCTCTTCATTTTTTCTTGGTAGTTCATACAGGCAGGAATTCCACCACAGGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGTTTGGGTGGCGTTAGTCTTCCTTGACTGTTGGGGCTCTGAAGGAATGCTGGGTGGCAAGTGTTTTTTTAATATTGTCTGTCTTCTTGTCACTGCCTTCTTCAGATCATTATTTGTACAAGTGACAAACTAGCTCCACCCTTTGCCTTCTAACTGGCATTTCACTTCTGTTGCTTTTTTTTTATTTTTGATCTAACCATGTTCATTCTACTTCTGTTTACTCCCTGTGGCACTCTTCCTCTAACTGCAGTTCAGTGCTACCATGCTTGATATTCCTTGGCCAGCTGACAGCTCACTTATCTAATGCACGTGGAGCCTAACAGTTTCATAGACAGGTACTACTTCTTGTCCTGGGCTTCTGGTCAGTAGGGCTTTTCCCCCAACCTGTGTCATGAACTTTACCCCGCATGTAGATGAAAGGAAGTAATGGCTTCACTGAGGGGTGTGAACTCTTACAATTTAAGTTGCTACCATACATGTCTGACTAATGTTAGTATGTTCAGTCATTGACTTCTTGGCTGCTCCAGCAGAAATGCTAGTCAAGCGTTCTTAGATCACAGATGGAATTCTAGTTTGTGAGTAAACAAAATACTACCAGCTCTACTAGCAAATCTGAGTACTTGATTCTCAGATTTGCTGTCATTTTTGCTTTTGAAAATATACAAGAAGTCCTTAGTTACAAAAATTACTTTTTTGAGCAAATGTATGTCATTCAGAAGTGTTACTTTAAATTCAAAGTAATTTTGTGTTCAAATTGTGTATGTTCAGCCTGATACTTTATTCCTTATCTACTTTAACTTTCACAGTAATTCTTTGAAACAGTACTCTCAGCAGACTCAGTTGAAGGCAGGTATTTTAGCAAAAAAAATCTGCTACTTAAATATTTGAGTGTAGTTTTTAATGCACATAAAATATTTGATCTGTCATGTGTCTTTGTAAAACTTAGAACTGAGACAGTCTGTGTTCCTGCATTGTAGAATGTCACATGATGAGAGTGCTTTTATCAGTCAGCATGGTTAGAAATTCAGCATGGGAACTTTTGCATTATATATTAAGTAATCTTGTTTGTCTTGTTTAATTTTTTACTGCATATTTACATGGTTACTAGAAAAGAGGGAGGGGGGAGAGAGATGCATGTAATCATTTTTGTAATTTTTTTCAG
Seq C2 exon
GTATTTTTAGCAGCAATGATGTAGCAGTATCATTTCCAAATGCAGTATCTGGCTCAGGATCTAGCACTCCCGTTTCCAGTTCTCATTTACCTCAGCAGGCTTCAGGCCACTTGCAGCAAGTGGGAGCTCTATCACCTTCAACTGCGCCTTCTATAACTACTGTTGTTGCTGCAACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007928:ENSGALT00000012873:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.650
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]