GgaINT0105043 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NEW8]
Coordinates
chr1:75822939-75823804:-
Coord C1 exon
chr1:75823584-75823804
Coord A exon
chr1:75823155-75823583
Coord C2 exon
chr1:75822939-75823154
Length
429 bp
Sequences
Splice sites
5' ss Seq
CAGGTGACA
5' ss Score
5.49
3' ss Seq
ATAATATTTTTTCTTTTCAGGAC
3' ss Score
11.71
Exon sequences
Seq C1 exon
GCGGTTCAGTTTACTGGCAGAGAGAAAATAAGCCACCAGCAGAACACTTCCCTGCTTTTTATTCCCGTGCCCCTTCTGCTGAGATTGAAATGACCAGCTATGTACTTCTGGCTTTGCTCAACAAAGCCGAACTCACACCGGATGACTTATCATATATTTCTCGCATTGTGTACTGGCTCGTGAAACAACAGAACCCATATGGTGGTTTCTCCTCCAGCCAG
Seq A exon
GTGACAACTGGGTGTGGTAAAGAGAATAACTTCTGGGAATAGTGCAGCCTGCAAGGTGGATGACATTTCTTCCTCATTGTACATTCATTTGAAAAGTATTTGATAAATGGTGCCCACATAAGTCTTGTCAGAGCACACTGAGCTCTTTGTTGGCAGCTTCATATATGGTATTTATTTATTAGGAAACAGGAATTCATCTGTTTTTTTTTTTTCAAGTTAGCATAAGACAACAGTAACTGTTGATATAGCATTAATCCTGGGATAATTCATGCCCATTGCTCCAGAACTTGTAGCTTCTCTCCTTGTCTCTTTACTAAGTCCTCCACAATTTATGTGCACTGACAAAGGAAAATAGCAGCTTTGTTAATCTCATGTGCTATTTCACAGCTGAATATCTGCCTAATTAGGGATAATATTTTTTCTTTTCAG
Seq C2 exon
GACACTGTTGTTGCCATCCAAGCTTTAGCCCAGTATGGATACCTCACCTTCTCTAAGGAAAGTCATAATACAGTTAAGGTCAACTTCATGGAAATCCCCAAGAAGGCTTTCCAGGTGAATGATGAGAACCGCTTCTTACTGCAGCAAACTTCCCTACCCACTGTTTTGGGGAATTACAGTGTGGAAGTGTATGGCACTGGCTGTGTCTATATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011930:ENSGALT00000019460:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.041 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(29.3=100)
A:
NA
C2:
PF076789=A2M_comp=PD(5.2=18.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCAGCAGAACACTTCCCTG
R:
GGGTAGGGAAGTTTGCTGCAG
Band lengths:
347-776
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]