HsaINT0135681 @ hg19
Intron Retention
Gene
ENSG00000126838 | PZP
Description
pregnancy-zone protein [Source:HGNC Symbol;Acc:9750]
Coordinates
chr12:9305721-9307435:-
Coord C1 exon
chr12:9307212-9307435
Coord A exon
chr12:9305940-9307211
Coord C2 exon
chr12:9305721-9305939
Length
1272 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
TGTCCACTCGTCTCTTCCAGGAC
3' ss Score
12.09
Exon sequences
Seq C1 exon
ACAACCTCGTCCATTGGGAGCGCCCTCAGAGACCCAAGGCACCAGTGGGGCATCTTTACCAAACCCAGGCTCCCTCTGCTGAGGTGGAGATGACATCCTATGTGCTCCTCGCTTATCTCACGGCCCAGCCAGCCCCCACCTCAGGGGACCTGACCTCTGCAACTAACATTGTGAAGTGGATCATGAAGCAGCAGAACGCCCAAGGTGGTTTCTCCTCCACCCAG
Seq A exon
GTCAGTGGTTCCCAAAGAGTCTTCTGCTCCAGGTTCACTTGGCAATTGGGAGGCTTAAAAGTAGAACAGTTAATGGAAAAGAGAAGGCAATTATTAAATCATTGAAGAAGTATTTAGGAATATTTGAGGACCATGAGAATTTAAAGGAAAGACTTAAGACATCCCCCATAACACTTTTCACTAAGCCCTATGTTAATATATTAGCAACATGGAGACGTACAACGAGCATCTTTACCCTCTAAAGCCACGCTATGGTCATTGGACACATTCTAGACCAGAGTTTTTCAGCATCAACACTATTGACATTTCGAGCCACATCATCGTTGTAAAAGGAACTATCCTCAGCCTTATAAAATATTCAATAGTATCCCTGGCCTCTCCCCATTAGATGCCAGTAGCACGTCACTTCCAGTTGAAACAAGAAAAAATTTCCTCCAGTTGGGAACCAATGTTCCAGACATCTTCAGAATCTAACAAGAAATCCTCTAAGATGTATTCCCCAAAAAATGTGTGATTAAAAGTACAGTGACTAAGTAGAATCCACTTTGATCTTTTTGGAATGAGAAGTTCCATTTCAACTACTCCAAGGAACTCAGCTTCTTCATTCCTTTCTACTTTCCCTGAGAGTGCTCTTCTTACTTTCTCTTTAAGTTGATCTTTTTTAAGCTGAAGCTCTTGAAAATGTATTTTTCTAGCATAATTCTAAAAGTATTTTATCGAGAGTATAAATGATTGTATTAAACACCCAGAGTGTCTGGCTTTTCCCTCCTACATGTCTTCTTTCAACAGTTAGGATCTCCATAGTGAAACTTTTGTTTTTCAGAGAGATTAGGTGGGGTAAATAAAAACAAGCTAGATGAAGGTAAAAAGAAACTCAAGAAAGTGCAACTTGTCTCATACCATTTTCATGTACAGTAAATTTTTATCACTCTTCCATCTAACTGGTCAATCATCTACTTAAAAATGGTCACTATTTTTGTCTTAACTTCTTAGTTTTAGACCTATTCTTTGAAGGACATATCCAAAAGGACTGTCAATGAAAATAAACAGTGACATTAATAAACATTATTAGCCTTTTATTTCATTTGGAGAAACTGCAGCATGATTTTGATAATGTCTGAAAGGCAGAGAAAAAGGAAAGGTAATTAGTGAAGATCTACCTTAGGGGTAAAAAGCCAGCTTCCCTCATGGTAGGCTAACACAGACTTTGGGGGAAAATCCCAGATGCCAAAAATTTACTCTTTGGGGCGGTTGTCCACTCGTCTCTTCCAG
Seq C2 exon
GACACAGTGGTGGCTCTCCATGCCCTGTCCAGGTATGGAGCAGCCACTTTCACCAGAACTGAGAAAACTGCACAGGTCACCGTTCAGGATTCACAGACCTTTTCTACAAATTTCCAAGTAGACAACAACAACCTCCTATTACTGCAGCAGATCTCATTGCCAGAGCTCCCTGGAGAATATGTCATAACAGTAACTGGGGAAAGATGTGTGTATCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000126838-PZP:NM_002864:29
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.227 A=NA C2=0.014
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(28.8=100)
A:
NA
C2:
PF076789=A2M_comp=PD(5.1=17.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCAGTGGGGCATCTTTACC
R:
TGGCAATGAGATCTGCTGCAG
Band lengths:
347-1619
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)