MmuINT0102591 @ mm9
Intron Retention
Gene
ENSMUSG00000059908 | Mug1
Description
murinoglobulin 1 [Source:MGI Symbol;Acc:MGI:99837]
Coordinates
chr6:121832600-121834420:+
Coord C1 exon
chr6:121832600-121832823
Coord A exon
chr6:121832824-121834201
Coord C2 exon
chr6:121834202-121834420
Length
1378 bp
Sequences
Splice sites
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
3' ss Seq
TATTTATTCATTCCCATCAGGAC
3' ss Score
8.57
Exon sequences
Seq C1 exon
ACAACTCTATCCACTGGAAAAGACCTCAGAAATCCAGGAAATCTGAACACCATTTGTACAAACCCCAGGCTTCCTCTGCTGAAGTAGAGATGAATGCATATGTGGTCCTGGCTCGCCTCACTGCCCAGCCAGCCCCATCCCCTGAGGATCTGACTTTGTCAATGAGCACCATCATGTGGCTCACAAAGCAACAGAATTCCAATGGTGGCTTCTCCTCCACACAG
Seq A exon
GTTGGTGGTTTCCCATTAGAGTCCCCATGGGGTTAGGAGATTTGAACAAGAGACACAAAGCAGTATAAACATGAAAAGGAGAGAAGAACAAGGAAATATTAGTCTAGGATATTTTCTGTCAATAGGAAGTGATGGAAGATATGTCCTGTAACAAATTGCCATAGTTCCTGTGCCCATCCACAGGAATTCTCCTCATACCATGGCTAGGGAAACAGGCCAATGGTACTGAGAACTTGTAACACAAATCCAGTGCTTACTATAAGACAATGACAAATATCCTGGACTATCCACAATCCTAGACATAGCTCCTGTGCCCTAGAACAGATTGTGGAGCCCTAAGACCAAACCAACATATCTGTTTCCCTACTGACCTTAGGTACAGCTGTTTCCCTTCTCCTGACAGACTCTCCTAATCTTAAGTAAAGACAGATCACCCTCAGGGTTTCTCCAAGCCAGCAGGAAGTCCTGCTGCCCTGCTTAACCTCTTGCTAGTTGGAAACAGCCAGGACTGTAAACTATTCTCTTTATCATCTAGTCAGTAAAACTATCAAGAGATAATATCTCACATCCCTGGAAATGCACATCTACTACAATAACTATAATTTATGCTCCAGGTATTCTGGGCAGACATGGCAGAATTAATTTCCAGAGAAATATAGCGAGATGGCAGGGCCCTCCAAAGGGGAAATATGATGTACTAAAAGAAAATTTCTGTGATACTAGACATCATGTTTTGCAGTTCCGTTCTTTCCATCTTTCCTTTCAATAGATTGTCCCTGTTGTGACAGTAAAACTCTCACTGCATGTTTCTGCTCTCTGGTTGGGCTCTGTTCTCAGGGTAGCATCTGGACCTCTCTGGATAGGGAAGGATCATGTGACAGAGATCCTTTCTGGAGCATGAAGTACTCTTGCCCAGAGTATGCCACCGAGGAGCAAGGCAGTGAAACACAACACTAGATCATAGATTTCCCTATTTAATAAGATTGGATCAGGACAGGCACTTGGCCATGCTGTTTGTGTGTCCTGATGGCTCAGCAAGGACAGAAGCAAGTTTATTGAGGAGTGCAGGGTTGTGATTTTGTGGGGTTATGGAGGGTATAAACAAGGGAACCAGGGACAAAGGAAGAAAAACAATGAATGCCAGGAGAAAATCTCTTTTGTATTTATATTTTTTTGATGGATACAGTGCTCCAAGGAAGAAAACCATGTGAATATTTTTGACTTTCAAATGTATTCTATATTAAAGCCTGAAATAAAGTCTTGAGCTCAAATAATTAGAGAAAAAAAATCTCATGACAGCTTGTGACAGCCAAAACAAACAAAGCTCAAGACCTTCCAAATGGCTGCTACCCTTAATGTATTTATTCATTCCCATCAG
Seq C2 exon
GACACTGTGGTGGCCCTTGATGCTCTGTCCAAATATGGAGCAGTGACTTTTTCGAGAAGTCAGAAAACGACTTTGGTGACTATCCAATCTACAGGGTCATTTTCCCAAAAGTTCCAAGTGGAGAACAGTAATCGCCTGTTACTACAGCAGGTCGCATTACCAGACATTCCTGGGGACTATACCATCAGTGTGTCAGGGGAAGGATGTGTGTATGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059908-Mug1:NM_008645:29
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.320 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(28.8=100)
A:
NA
C2:
PF076789=A2M_comp=PD(5.1=17.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCATATGTGGTCCTGGCTC
R:
ACACACATCCTTCCCCTGACA
Band lengths:
342-1720
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: