GgaINT0106216 @ galGal3
Intron Retention
Gene
ENSGALG00000006643 | HSP7E_CHICK
Description
NA
Coordinates
chr1:7857989-7862316:+
Coord C1 exon
chr1:7857989-7858162
Coord A exon
chr1:7858163-7862248
Coord C2 exon
chr1:7862249-7862316
Length
4086 bp
Sequences
Splice sites
5' ss Seq
CAAGTGCGT
5' ss Score
6.68
3' ss Seq
TGGTATCTTTTTCCTTTTAGATC
3' ss Score
11.08
Exon sequences
Seq C1 exon
GGAGTAGATGAGACGGGGGCTGACAAATTCACAGTGCTATTTCCATCGGGGACACCGTTACCAGCTCGAAGGCAGCACACCTTGCATGCTCCTGGAAGCACTTCTTCTGTATGCCTTGAACTGTATGAGTCATTAGGGAAAAGTCCTATGAATGAAGAAAACAAATTTGCACAA
Seq A exon
GTGCGTATATACACGTGCATGTATGCTTGTAGTGTAACCTACTTGGAAATCAAGCGGATTTAGGGGGTAAAAAATTAAACCAAAAGCAACCACACTTCTACTATAACTTGTTACAAAATTAGAATGAAATGCATTTCTATGGAAAGTGTACTTGAACATTCTTCTATAAATGTATTGTGAATTACTGAGTGCTTTTAAAAGAAATTCAGGTTTTCCTCCTGAGTTTATAAAAGCCTGTCTGGTTTTAAGGTGTGGCGCTACTGTGGTGCGTGCAGCTTGCCTGGGATGAGACACCATAACCAGTCACTCTTGTATCTACTTTAAAAATAAGTAAATAATATTTCTAGTAAGTTATCCAGAAATGAAACTACTGGAGGTAATGAAGAAGCTGGTGTATGTACTGTAATTCCTTTATGACTTTCCTAAATTAGATAGGATGTTGGTATTAAATACCGGTTCAGATCAAGTGAAGATTTAATCATATTAACACCATGAAAAGTGAAAAGATAACACTTGGAAGTCAGCCTTTTGAGAGAACATGGCTTATTTGAAACACTGATGATCTTAGCTTTGTTTCAGTGTACTTTTACAGCATCGAAGAGACTTGTGGCTGACACTGACAGGATGTTTGAGGGTAACTTTTTTCTTTCTACACTGGTCCTGCCACAGGGTCTTGGAGGACAGAGTAGGGAAGTCGTCCAGTAAGTATAGAGTTGATCCTAGATAAAGGAGCATGCTCAGCTCTTAATCTTATAAGTTCTCCAGCTATTTTGCTGATAGGCTCTGAAACATAAAAACACTGAAACAGTCATGCAGATGTAATTTTTTTTTTTTAAAAGGGAGATTTTTACTACAGCTGTGTGCAGTCCACTGGGGCATGCTTTAATGTTGATTATTAGTACCACACGTTAAACAGAATAAATCCCATGCCTCAGTTACTGCCTGCATCGTTTTTCCTTTAGATTGCTGTCCAAGATCCTATAGAGCTTAAAAAATATGTGGTATCTTTTTCCTTTTAGATCGTGCTCCAGGATTTAGATAAAAAGGATGGCCTACATGATATATTGACTGTTCTCACTATGAAAAGGTACACAAAATATTTATTTTTCTGCCATTTAACTTGCTTCATCACACTTCTATCAAATGGCTTACCTATACCTGAGAGCAGTCATGTTCTCAGGTGTCCTCTGGAAGGTGGTCTGGTAGTTCTGCCCAATGCCCTCTTGGAGGAATAATGGAAGTGAGATCAGTCTGTAGTAGCTGCTAATAAATACATGGAGGACTTCCTATATGTGCTGCATTTATGAAGAAAGTCTGGTGGACCTCTCCTAGAGGCATGTTAAGCATGAAAACCAGTGCCACAGGAAACTGAGCTTCATAAATGTCCTTTTTAGAGAATTACCTGTTCGTTTGTTGTAGAAAATCTTACAGTTATGATAGAGGAGGGGGAATGGGATTACCAGTGAAGAGCTTTTGCCGACTTCCTGATGTCGTAAACAGTTGANNNNNNNNNNATGCTGGAGTGTAATAACAGGAGCATAGCTGTGAGTGTTGAGAAGTTTTTCCTTCCCACTCTCACAGCTGCATCTGGATGGCTGTTTCTGTAGTTCACAGTAACAGAAATACTGAAACTCATGCAGCAGAGAGGCTGAATCATAAGATGATCAAGGAGGAGCCAGGAGAACGGTATTTTCTTGGCTGTTAGAAGGCTCAGGAATAGACTTTCGTTTTGCCTACAGTTGCCTGGTTGGAAGGCATAAATAAGACAAAATGTGACTTATTTGTGTAAGTACATGATGGAATAGCAACCAGCACAAGTTGTGATGGGAGGAACCAGAAGACGTTGTAATATGAGTGCAAACAACTTCTAGGGTAGGGCCTGCAGAGAGGTTTTGGAATCTGTATCTGTATAGCTGCCTGTTGATGAGTTCTGAGCAGGAGACTGGACCTCTGGAGCTCTCTCCCAGCCTAACCAGACTTCATGATGGATTCCTCAATCTTTAAAATGCTTCTTCGTCTAGCTGGTGCTTATGAGAAACTTTTTCAAGATACTATTTCAAACTTGCAAGCTATTTCCTTTAACTTCAAATGCAAAAGGAATAGAAGTCAAGCAAAGATGGCATCAGGGTTTTTTTTTGTTTTTTTTTTTTAACAGCTATGGATGCTAAAGGATCCCAAAGCAGTTTACAGTTCTGTATTGCAGGCTGTTGCCTGTCTTTTTTTTGTTGTTTTTGTTGTATGTTAATTCTTTTCTGAAAAGAGATTTGAAAACACTGTCATATTTTCCAGGTAGTTTTGTGTGGTGGATCTGCTCGAATCCCAAAACTGCAGCAGCTGATCAAAGACATCTTCCCAAATGTGGAACTACTGAGCTCAATACCTCCGGATGAAGTTATTCCCATTGGTGCAGCAATAGAGGCAGGAATCCTACTAGGGAAAGAAAACCCTTCTCTGGAAGAAGAAGCGTTGTTTATTGAGTGTTCTGCCAAGGATATTCTTCTTAAGGTAAGGGTAAAATTACTTGAAAATGTTACTGCTGCAATGATTGCATAGCACTATGCATGCATTGATGTTAAAGAAATAATATTGTTTTAATAAATTACCACTTAACACCTGACCAGTGTATGTGTATTGGTACTGATAGAGCAGCTCCTCTTGGCTCTCAAGAAGATGGATTGTGTCTTTGCTATTTCCTTAACAATTGCCGTGTTCTTGTAATTGCTGGATTTTCTTCACTCACAGAAACTGTTTTTTTAAATGGAATTGTTGTGATGGTAAATTCAGCAGAGGGAAATGAATCTTGTGTTTCTTTTCTCGTGGAGCACTATTACAAAGCTTCTGGCTCACTAAAATACTTAGAAAGGCATGAACTTTTTTTTTCTTTCTTTTAAAGGGAGTAGATGAGATGGGGGCTGACAAATTCACAGTGCTATTTCCATCGGGGACACCGTTACCAGCTCGAAGGCAGCACACCTTGCATGCTCCTGGAAGCACTTCTTCTGTATGCCTTGAACTGTATGAGTCATTAGGGAAAAGTCCTATGAATGAAGAAAACAAATTTGCACAAGTGAGTATATACACATGCATGTATGCTTGTAGTGTAACCTACTTGGAAATCAAGCGGATTTAGGGGGTAAAAAATTAAACCAAAAGCAACCACACTTCTACTATAACTTGTTACAAAATTAGAATGAAATGCATTTCTATGGAAACTGCACTTGAACATTCTTCTATAAATGTATTGTGAATTACTGAGTGCTTTTAAAAGAAATTTAGGTTTTCCTCCTGAGTTTATAAAAGCCTGTCTGGTTTTAAGGTGTGGCGCTACTGTGGTGCGTGCAACTTGCCTGGGATGAGACACCATAACCAGTCACTCTTGTATCTACTTTAAAAATAAGTAAATAATATTTCTAGTAAGTTATCCAGAAATGAAACTACTGGAGGTAATGAAGAAGCTGGTGTATGTACTGTAATTCCTTTATGACTTTCCTAAATTAGATAGGATGTTGGTATTAAATACCGGTTCAGATCAAGTGAAGATTTAATCATATTAACACCATGAAAAGTGAAAAGATAACACTTGGAAGTCAGCCTTTTGAGAGAACATGGCTTATTTGAAACACTGATGATCTTAGCTTTGTTTCAGTGTACTTTTACAGCATCGAAGAGACTTGTGGCTGACACTGATAGGATGTTTGAGGGTAACGTTTTTCTTTCTACACTGGTCCTGCCACAGGGTCTTGGAGAACAGAGTAGGGAAGTTGTCCAGTAAGTATAGAGTTGATCCTAGATAAAGGAGCATGCTCAGCTCTTAATCTTATAAGTTCTCCAGCTATTTTGCTGATAGGCTCTGAAACATAAAAACACTGAAACAGTCATGCAGATGTTAGTTTTTTTTTTAAAAAGGGAGATTTTTACTACAGCTGTGTGCAGTCCACTGGGGCATGCTTTAATGTTGAATATTAGTACCACACGTTAAACAGAATAAATCCCATGCCTCAGTTACTGCCTGCATCGTTTTTCCTTTAGATTGCTGTCCAAGATCCTATAGAGCTTAAAAAATATGTGGTATCTTTTTCCTTTTAG
Seq C2 exon
ATCGTGCTCCAGGATTTAGATAAAAAGGATGGCCTACATGATATATTGACTGTTCTCACTATGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006643:ENSGALT00000010732:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.103 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0001215=HSP70=FE(11.3=100)
A:
NA
C2:
PF0001215=HSP70=FE(4.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]