MmuINT0079332 @ mm9
Intron Retention
Gene
ENSMUSG00000079615 | Hspa14
Description
heat shock protein 14 [Source:MGI Symbol;Acc:MGI:1354164]
Coordinates
chr2:3406970-3408382:-
Coord C1 exon
chr2:3408209-3408382
Coord A exon
chr2:3407041-3408208
Coord C2 exon
chr2:3406970-3407040
Length
1168 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
3' ss Seq
TTTTGTTTTTGCACCAACAGGTT
3' ss Score
9.66
Exon sequences
Seq C1 exon
GGAGTGGATGAGTCAGGTGCCGACAGATTCACAGTACTGTTTCCCTCTGGGACCCCGCTGCCAGCCCGAAGACAGCACACACTGCAGGCCCCCGGGAGGGTGTCTTCCGTTTGCCTTGAACTCTATGAGTCTGAGGGGAAGAACTCTGCTAAAGAGGAGGCCAAGTTTGCACAG
Seq A exon
GTAAATATATAAAACTGGACATTACAGCTTTGTCTCAGGCAAATATTTCACTTTTCCTCCTGAAGTCCATTCAGTTAACATCTCCATTAACACAAAATACATGTACTCTGGTAATTCTTAACACTAAGTTGCTTCTACTTACTCGTGTTTTGAAAGTGAGAAGAAATAATTGCTGAAACAATAAGAATGAAACCATTTTGTGTTCACACTGCTTCTCTGTGCTCTGGGCTCATCTTAGTAATTTGACAACTGGAAGGAGAAAAGATTTTTCGGTTTGGTAAATACCAGATGCTGTATGAGGTAATGTTCAAACAGAACTGCCTGCCTCAAGTTGTCCTCTGACCTTTACACACCTATCTCGCCTGTGCATGTGTGCACACAAAATAACAAGAAAGAAGAATTTTGTGAAAAGAAAATTGCAGGCTGGGCAGTAGTGGGTGGCGCATGCCTTTAATCCCAGCACTCAGGAGGCAGAGGCAGGCCGATCTCAGGGAGTTTGAGGACAGCCAGGGCTACATGCAGAAACCCTGCCTTGGAAAAAGAAAGAAAAAGAAAATCACAGAAGATACATGGAACCAAGCTGGGAAGAGAATATTTCTTTGCGCCCGTCTGTTCACACACCCTTTCCAAGTGAGTCACAGGACGGGGACTTGTAAAATCATTAAACTTGATCTTGGCAGAGTCCAAGACACAAAGCCAAACTTCTAACTGGGTGTATTGGAACATCTATCTTTCAGAACTAAGAAATTACAGACTTTCATAATACCTCTTGCTGACAAATGTTACCCAAAAACTCTGTATATTTCTTTGAAATGGATAGCAGTCCGAGTATACACGGAGAGTGTGCTGTGGGTAATCCATGTTACCATGGTAATGACTTAGCATCAAAATCGTCCATGTTTTTGAGGGCAGTGCTTCTCAGCAACAATCATGTTAATTGGATATGACATAAAAGAGGGACAGATGCTTTAATTGTCTTATATCCTCCTTCCAAAGGAGATAGAAGCCTCTTAAGGCTTAACTCCTTAATTTCTGAATTCTCCCTAAATGGTAAGATAGTTTGAAAGCTGCCCTAGTTTAAAAGGTTTGTTTTGGTTAGAGCCTTGATCCTTTACAATAAAAAGTGCTGAATTACCTTTGTTTGTTTGTTTTGTTTTTGCACCAACAG
Seq C2 exon
GTTGTACTCCAGGACTTAGATAAAAAAGAAAATGGATTGCGTGATATATTAGCTGTTCTTACTATGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079615-Hspa14:NM_015765:12
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGTGGATGAGTCAGGTGCC
R:
ACAGCTAATATATCACGCAATCCA
Band lengths:
230-1398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: