HsaINT0077896 @ hg38
Intron Retention
Gene
ENSG00000187522 | HSPA14
Description
heat shock protein family A (Hsp70) member 14 [Source:HGNC Symbol;Acc:HGNC:29526]
Coordinates
chr10:14867736-14870667:+
Coord C1 exon
chr10:14867736-14867909
Coord A exon
chr10:14867910-14870596
Coord C2 exon
chr10:14870597-14870667
Length
2687 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAAT
5' ss Score
6.6
3' ss Seq
TATTGTTCTTGTATAAACAGGTT
3' ss Score
8.56
Exon sequences
Seq C1 exon
GGTGTGGACGAATCAGGAGCCAGTAGATTCACAGTGCTGTTTCCATCAGGGACTCCTTTGCCAGCTCGAAGACAACACACATTGCAAGCCCCTGGAAGCATATCTTCAGTGTGCCTTGAACTCTATGAGTCTGATGGGAAGAACTCTGCCAAAGAGGAAACCAAGTTTGCACAG
Seq A exon
GTGAATACATAAAGTTAGACACATTAAACTGTTCAACTTTGCTTTCTGGATTAGATTCAGTTTAATATCTTAATACAAAATGTGTATATATATAAAGGACACCTAATACATTTTTATGAAGGATTTTATGAAGGCTCATTTCTGAAAATGAACACCTGTGTACTCATTTTTGAAAGAGGGAAAAAATAGGCAGTTCTAATTTGAAAGAGTTCTGGGTATTTAGACTGCTTCTCTGTTGTGCTCTTGGCCTACCTTGGTAGTTAGGTAAGTGGAATGGGAGAATTATATTTTTTGGTTCATGCTAAATGCACATTATTGTGTACGTTTTACAGATGATTAAGAAGTTGGCCTGTGATAGCAAATACCCTTTATTTTCTTGGTCAAGCTAGGGTTTCTCCTCACGTTGGTTTCATTTCTGAGCCCATGACATGCTCTTCCCATTGTGCCATGCTGCCTCTGAGACAAGATAGGTTTGCTTTTTTAAAATACCGCGTGCATATCTTATACTATGTGACCCTCTGTATGCTTTACAGAGAGTGAAGTAGAGCCACGTTATTTACTTAGAAACATGTCTGAGAAATGCAGTTGCATTCACACACACACACACACACACACACGGACTGCAGAACAGTATTTGTATTACAATGCCATTTGTATCTAAATAAAAAGTCTGGGAGCATGAGTGTGTGTGAGGAGGTAGTATTTGAGTAGGGGTGCATTTTCAGATATCCAGGCATTTATACAGAAAATATCTATAGGTACTTAAACCATATTCCAGAAACTTCACAGTAGGTAAATAAGTTTGAAGGTACCAAGAGGGGTTTTTTGACTTTTGACACCTTATACTGAATTTTTTACAAACAGCACAGGACATGAGCATGAATTACTTTTATAGTAAAAATTAAATATCGGTAACAAAAAATAATGTACTGTTTTTTTTGTTTTTTCTTTTTTTGAGACGGAGTCTCGCTCTCTTGCCCAGGCCAGAGTGCAGTGGCACGATCTCGGCTCACTGCAAGCTCCGCCTCCCAGGTTCATGCCATTTTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGCGCCCACCACCACGTTCGTCTAATTTTTTGTATTTTTAGTAGAGACAGGGTTTCACCGTGTTAGCCAGGATGGTCTCGATGTCATGACCTCATGATCCGCCTGCCTTGGCCTCCCAAAGCAGTATTGTTTTTTAAAAAATATATGCACATTCAGAGAAGTCCAGAAGCAGACTAAAAATGCCTAGCTTTTTTGAGAAGACAGGGTGTTTATTAGTGATGAGATATTGTGTGTGTACGTGTACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAAGAGATACATATCTTTAGCTCACATATTTATTTTAATTTTTTTTTTTTAAGACGGCATCTTGCTCTGTCACCTAGGCCAGAGTGCAGTGGCATGATTTCAGCTCACTGCAACCTCCACCTCCCGGGTTCAACTGATTCTCCTGCCTCAGCCTCCGGAGTAGCTGGGACTACAGGCATGCACCACCACACCTGGCTAATATTTGTATTTTTAGTAGAGACAGTTTCACTGTGTTGACCAGGCTGGTCTCAAACTCCTGACCTCAGGTGATCTGCCTGCCTCAGCCTCCCAAACTGCTGGGATTACAGGCATGAGCCACCACGCCTGGCCACATATTTATTTTCTAATTCCAACAAAAGAGTAATGAAAACACACACATGCATAACATGCCTGGGCTGCACCTCAGACTTACCAACTTGGAATCTATTGGTAAAGTTTTAAAAGCGCTTCCACATGAATTGGTTTGTGTGTGTCTAAGAACCTTCCCATGCACCAGGTTTTTGAACTCAGATGGCAGTCCTAGTATTTCCTTAGCTCTTCTCTCACAGTTCTGTTACCTTTTTCTTCACATCCTCTCTGAGACTCCATAGCTGCTGCCACTATATCCTAACTTAAAGATGCCAGGAGGAGCGTTAGCCACGTAATACTGAATTTGGAAGAGAATCTTTCAGAGTTCCCATCTGTTCTAACCTTATTTTACAAATGAGTAAAACAAGGTACTTAGTAACTTACCTAAGTTATTAAACTAGAGTTTGGCAAAGCCTAAAGTCACTGCAGAACTCCAAATCTGGTTTCTTGATATACCATTCTTTAGGAAACTGAGGAATTTTATAGTAAATTCATTACCATCTCTTACTTACAAATATAATCTTAGTTGTACAAAAGAGTTTGCCATGTTTTTAAGTAGGTGATTTTCCAAATGTATTTAAAATGCTTGATTTTTTTTTTTTAAGTATATATAGAAAGCTAGCCAAATTATAATTTGCGTGTTACTGGGAATGGCTTACTTACCAAAAAAGAAAAGTAGCCTTTATTTTCCAAGATTAATAGTACATCTTAGAAACAATGATTTTAATCTAGGACATGACATTTAGAAGGGACAAATGCATTAGTTATCTTATATGCCCTCCTTCTGGAGGAAACATTTCAAGTTAACAAAGCTTCACTCCTATTCTCTGAATTCTGATTCAGTGGTAGGAGAATTGAAAACTGCCCTATTTTAAAAAGGTTTGTTTCAGTGATAAATAAGCTTTGGTCCTTTGCAATAATTGATACATCAGTTCATTTATGTAAAGATGCTGAATTCTCTTCATATTGTTCTTGTATAAACAG
Seq C2 exon
GTTGTACTCCAGGATTTAGATAAAAAAGAAAATGGATTACGTGATATATTAGCTGTTCTTACTATGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187522:ENST00000378372:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.069 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0001215=HSP70=PD(11.7=91.4)
A:
NA
C2:
PF0001215=HSP70=FE(4.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development