HsaINT0077896 @ hg19
Intron Retention
Gene
ENSG00000187522 | HSPA14
Description
heat shock 70kDa protein 14 [Source:HGNC Symbol;Acc:29526]
Coordinates
chr10:14909735-14912666:+
Coord C1 exon
chr10:14909735-14909908
Coord A exon
chr10:14909909-14912595
Coord C2 exon
chr10:14912596-14912666
Length
2687 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAAT
5' ss Score
6.6
3' ss Seq
TATTGTTCTTGTATAAACAGGTT
3' ss Score
8.56
Exon sequences
Seq C1 exon
GGTGTGGACGAATCAGGAGCCAGTAGATTCACAGTGCTGTTTCCATCAGGGACTCCTTTGCCAGCTCGAAGACAACACACATTGCAAGCCCCTGGAAGCATATCTTCAGTGTGCCTTGAACTCTATGAGTCTGATGGGAAGAACTCTGCCAAAGAGGAAACCAAGTTTGCACAG
Seq A exon
GTGAATACATAAAGTTAGACACATTAAACTGTTCAACTTTGCTTTCTGGATTAGATTCAGTTTAATATCTTAATACAAAATGTGTATATATATAAAGGACACCTAATACATTTTTATGAAGGATTTTATGAAGGCTCATTTCTGAAAATGAACACCTGTGTACTCATTTTTGAAAGAGGGAAAAAATAGGCAGTTCTAATTTGAAAGAGTTCTGGGTATTTAGACTGCTTCTCTGTTGTGCTCTTGGCCTACCTTGGTAGTTAGGTAAGTGGAATGGGAGAATTATATTTTTTGGTTCATGCTAAATGCACATTATTGTGTACGTTTTACAGATGATTAAGAAGTTGGCCTGTGATAGCAAATACCCTTTATTTTCTTGGTCAAGCTAGGGTTTCTCCTCACGTTGGTTTCATTTCTGAGCCCATGACATGCTCTTCCCATTGTGCCATGCTGCCTCTGAGACAAGATAGGTTTGCTTTTTTAAAATACCGCGTGCATATCTTATACTATGTGACCCTCTGTATGCTTTACAGAGAGTGAAGTAGAGCCACGTTATTTACTTAGAAACATGTCTGAGAAATGCAGTTGCATTCACACACACACACACACACACACACGGACTGCAGAACAGTATTTGTATTACAATGCCATTTGTATCTAAATAAAAAGTCTGGGAGCATGAGTGTGTGTGAGGAGGTAGTATTTGAGTAGGGGTGCATTTTCAGATATCCAGGCATTTATACAGAAAATATCTATAGGTACTTAAACCATATTCCAGAAACTTCACAGTAGGTAAATAAGTTTGAAGGTACCAAGAGGGGTTTTTTGACTTTTGACACCTTATACTGAATTTTTTACAAACAGCACAGGACATGAGCATGAATTACTTTTATAGTAAAAATTAAATATCGGTAACAAAAAATAATGTACTGTTTTTTTTGTTTTTTCTTTTTTTGAGACGGAGTCTCGCTCTCTTGCCCAGGCCAGAGTGCAGTGGCACGATCTCGGCTCACTGCAAGCTCCGCCTCCCAGGTTCATGCCATTTTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGCGCCCACCACCACGTTCGTCTAATTTTTTGTATTTTTAGTAGAGACAGGGTTTCACCGTGTTAGCCAGGATGGTCTCGATGTCATGACCTCATGATCCGCCTGCCTTGGCCTCCCAAAGCAGTATTGTTTTTTAAAAAATATATGCACATTCAGAGAAGTCCAGAAGCAGACTAAAAATGCCTAGCTTTTTTGAGAAGACAGGGTGTTTATTAGTGATGAGATATTGTGTGTGTACGTGTACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAAGAGATACATATCTTTAGCTCACATATTTATTTTAATTTTTTTTTTTTAAGACGGCATCTTGCTCTGTCACCTAGGCCAGAGTGCAGTGGCATGATTTCAGCTCACTGCAACCTCCACCTCCCGGGTTCAACTGATTCTCCTGCCTCAGCCTCCGGAGTAGCTGGGACTACAGGCATGCACCACCACACCTGGCTAATATTTGTATTTTTAGTAGAGACAGTTTCACTGTGTTGACCAGGCTGGTCTCAAACTCCTGACCTCAGGTGATCTGCCTGCCTCAGCCTCCCAAACTGCTGGGATTACAGGCATGAGCCACCACGCCTGGCCACATATTTATTTTCTAATTCCAACAAAAGAGTAATGAAAACACACACATGCATAACATGCCTGGGCTGCACCTCAGACTTACCAACTTGGAATCTATTGGTAAAGTTTTAAAAGCGCTTCCACATGAATTGGTTTGTGTGTGTCTAAGAACCTTCCCATGCACCAGGTTTTTGAACTCAGATGGCAGTCCTAGTATTTCCTTAGCTCTTCTCTCACAGTTCTGTTACCTTTTTCTTCACATCCTCTCTGAGACTCCATAGCTGCTGCCACTATATCCTAACTTAAAGATGCCAGGAGGAGCGTTAGCCACGTAATACTGAATTTGGAAGAGAATCTTTCAGAGTTCCCATCTGTTCTAACCTTATTTTACAAATGAGTAAAACAAGGTACTTAGTAACTTACCTAAGTTATTAAACTAGAGTTTGGCAAAGCCTAAAGTCACTGCAGAACTCCAAATCTGGTTTCTTGATATACCATTCTTTAGGAAACTGAGGAATTTTATAGTAAATTCATTACCATCTCTTACTTACAAATATAATCTTAGTTGTACAAAAGAGTTTGCCATGTTTTTAAGTAGGTGATTTTCCAAATGTATTTAAAATGCTTGATTTTTTTTTTTTAAGTATATATAGAAAGCTAGCCAAATTATAATTTGCGTGTTACTGGGAATGGCTTACTTACCAAAAAAGAAAAGTAGCCTTTATTTTCCAAGATTAATAGTACATCTTAGAAACAATGATTTTAATCTAGGACATGACATTTAGAAGGGACAAATGCATTAGTTATCTTATATGCCCTCCTTCTGGAGGAAACATTTCAAGTTAACAAAGCTTCACTCCTATTCTCTGAATTCTGATTCAGTGGTAGGAGAATTGAAAACTGCCCTATTTTAAAAAGGTTTGTTTCAGTGATAAATAAGCTTTGGTCCTTTGCAATAATTGATACATCAGTTCATTTATGTAAAGATGCTGAATTCTCTTCATATTGTTCTTGTATAAACAG
Seq C2 exon
GTTGTACTCCAGGATTTAGATAAAAAAGAAAATGGATTACGTGATATATTAGCTGTTCTTACTATGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187522-HSPA14:NM_016299:12
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.069 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0001215=HSP70=FE(11.2=100)
A:
NA
C2:
PF0001215=HSP70=FE(4.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)