GgaINT0106482 @ galGal3
Intron Retention
Gene
ENSGALG00000016946 | SUGT1
Description
NA
Coordinates
chr1:170017754-170020746:-
Coord C1 exon
chr1:170020520-170020746
Coord A exon
chr1:170017845-170020519
Coord C2 exon
chr1:170017754-170017844
Length
2675 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGA
5' ss Score
7.62
3' ss Seq
TTTTCTGTGTTTCTTCACAGGAA
3' ss Score
12.59
Exon sequences
Seq C1 exon
GCGCGCGGCTGCGGCCTTGGGGCGTGCTGCGCGGGCGCCGCGGCGGCTCCAGAAGTTTCCTGGGGGCGGCGGGCGGTATGGCGGCGGCTGCAGAAGCAGCAGCGCGGTGAGCGCCCCGTTCCTTCTTCCCTGCCCGCGCGTCCCCGCCTCGCCGCCTCACGGCGTTGTGTTTCCTCGGCAGGTTCTCGGACGCGGACATCGACCGAGACCCGACGGCGGCGGCGCGG
Seq A exon
GTGAGAGGCGGGACGGGGGGCGGCGGAGGGCGCTGAGGGCTGTGGGAGGGACTGGGGGCTCTCGCGGGCGCTCCCGCAGCGCTGTCTGCTGGGGGTGGTTCGCTACGCTGCTCCCGGAGGGCTGCCCTCTGCGTGGGGCCTGGCTCAATTCAGGGCACTTCTGCCTTTTCTTTATCAGCACGAGTGCCGTGACAGAAGTAAAACCCCTCTCTGTGCCGTGTGGATAGGGCAGACCCCTAAATCAATTGTCACTTGCGGTTAAATAAACAAGCTTATCGGAGAAAGGTATTCAGTCTGTTAGCCTTTATTCTGCCGTGACCGGTGAGTCCCGTAATGCAGCGTAGCGTTCTGCTGACTTACCAGCTTGGAGCTGTACGTAGTGCACCAGGTTTACTTGCTCTTAGGTGTGGTCTTTCAGCTCATGTAGTTAACATTCATAATCTGGGCCATGGCACCCTGTAAGTGGTGCTGTGTCCTGCCTGCATGCTTGACAGAACACACGTCCAGTCAGCGTGGCATTTCCACAGTGTCCTCCCAACTTGTGATTCCTTTCATTCCTCACGTGCATGTTTTGGCTTCCTGCTCCTGGGTCTGATACAACTGGGAGGTCATCATCTGTCTCTAAGCAGTGAATGGTGTGGCTCTGGGGCAGCCTGGCCTGGTGGTTGGCAACCCTGCCTGTGCCGGGGGGTTGAAACGAGGTGATCAGGCAGGAGTGAGACAGGAGGCTGAAAACACTTTTAATTCATACCAACTCTTACCGTTATTGTATCTCTGTGGATTTACAAACATGTTTGTAACTTGATCGCATGGTAAGGGCCTGGAGAGAAGGTAACTTGAAGGTATCTATTTGAGTCTTTGGGAGGACAGGGCCTGAGCTTGCCTAAGTAACCGCAGCTGATGTCCACCATCCAGAATTCTTAGTGCCAGTCAGCTGCCCCTTGGCTGACTTCTCAAGTTGCTGTGCTGTATGATTTGTTTTGAGGAGGAGTGTCTTGGTAGCTGAACGAGATGTGGTGATTGACTGACAAAAAGCCAACCGAGATAAGTTCACCTAGCTGAAAATGCTTGCCTTTGCTTTCCGTGGGTGAAGGCTAGTTCTGCAGCCCTTCCTCTGAGGAATCTGCTCCTGCACTGGGTGCTGGTTCGGATCAGTGCTCCTGTTTTCAGAACAGAGCATGGGAGGTTACATTTGGTCACAGAATGGGTACTGCTTGTCAAGCACCTGTAGTGTTCAGCGTCAGACTCCTGCTTGGTTTTGAGGGTGAAAAGTTGTACTTCACTTCTCAGTGTTATGTGATCCTGTTGGATTTCCTCGTGCTTCTCCTGTATTCCATTTGTATACCATGAATGTTTTCATTTTGATGTCTGCTCTTGAATGTATCCTTAAACTTAGGGGCACGTCTGTACAGTTAGACCTGGTGTTGCTTTTTGTTGTAGCTCTTTCTGCCTGCTGTTTCTTCAGAGACCTCTGAGGTTTTAAGATTTTTGTGCTGTACTTCCACAGAGCTTTGTACATCTTCCATGACACTGATGCTGCCACTGTTGTGGCTGCGTAGTTCCTAATTGGTGTAAGCATATAAATGAAGGAGAGCAGGTTGCCAGTCTGAATTAAAACGGGCCCTGCTACTCTTCCTTTTTTTCTCTGGCTTGGTGAGATTGAGTTCTAGCAGCTGTGTTGTACTAACATTTATGCGGGCTTAAAGTCTGTATCTCAGCCACCCTCATGCTTGCCAAATTCTGAATAGTGAATTCAGTGAAGTTAGGAAACATAGTAACTGTGCTGTGGTGATGTAGGGAAGTAGTTTCAGAAGACCTGCCATGTTCTTGCAAAGACAGGAGCTTTGCTCCCTGGTAGTAGGAGAACTGGAAACATTCTTTCCAAGTGTGTGTGCGTTGAGTCATTGTGCTTTCGTTCTGCTATGCAAAAATAATAAACTTTTCTCTCTGAGAGTATTTCAGTCTGTGTACCCAGTGATTTTCCTAGCAAGGGACTACTTCATGCTTTTCCCATTGTGCAGCAGCGTATCCTGTGAGCCCTGCGCTGCCTGAATCTTTTGTCCTTGTACTTTTCTTGCTCAGCTTGCTTCAGAACAATCTCCCATGCTCAATAACATCTTATAACATGTAATTTTATCACATTACAGTGCTTTGAGCGTGTTATTCCTGCACAGGCATATTGACTAATGTATATTGATTTCAAATCCCTGCTATTGCAGTGCTTCCTCAAATCCATCAGGCCTGTGTACGAATCACCGTATCACAGAATGGTTGAGGTTGAAAGGGGCCACGTGGGATCATTTAGTCCAAAGAAACCTCTGTTTCAAGCAGGGTCACCTGGAGCACATTGCCCACGGTCACAGCAAGGCATTTTTTTTCCTCAGATGTGCTGAGAATTATAGGAAGGTTTTTGGAACATACAGGATCACCTGTGCGTTAGAATTCCTATGTAAGGCATTGATAGTCCCTTCTCTGCAAGGAATAGGTGTAACTGGCAGGTTTCCTTGTACATTAAGCTCTGATACTTAAGCTTTATGGATGAAAACAGATCAATAGGTAAACGTTCGTGCTGGTCCAGGATATTTTTTCTGACATCTTACTTGACAGAGCTCTGTAATATATCTTCACGGGGATTCCCAAAGTGCCATTTCATGTTTTTCTGTGTTTCTTCACAG
Seq C2 exon
GAACTGACAAGAGCTTTGGAAAAGAGTCCAGATGATGCCGAATATTATTGTCAACGAGCTTATGCCCATATTCTTCTACAGAATTACACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016946:ENSGALT00000027390:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=NA C2=0.161
Domain overlap (PFAM):
C1:
PF134141=TPR_11=FE(22.4=100)
A:
NA
C2:
PF134141=TPR_11=FE(44.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]