MmuINT0154896 @ mm9
Intron Retention
Gene
ENSMUSG00000022024 | Sugt1
Description
SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:1915205]
Coordinates
chr14:79987761-79995266:+
Coord C1 exon
chr14:79987761-79987818
Coord A exon
chr14:79987819-79995175
Coord C2 exon
chr14:79995176-79995266
Length
7357 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
TTCCACGTTTGTGTTTGTAGGAG
3' ss Score
8.11
Exon sequences
Seq C1 exon
GCTTTTCCAGAGCTTCTCAGATGCTCTGATCGACGGGGATCCCCAGGCAGCATTAGAG
Seq A exon
GTGAGTGAGCTCACTGGGACTGTTGGGTCCCTACAGACCCCTCCTCTTCCCGGCATTACCTTCGTGGGAGCAAAGCTACAATGTATCTAAGTCCCAAAATTAAGATACTTAATCTCTTTGTCTCCTTAATACCTTTGCCATAGATCTTGCCCTTCCTCTCCACAAGCTCCCGATGAGGGCACCTCCCTCCCATTTATTTCTTGGAAACATAGTTACTGTCTGTGGTTGCACTTATAATGGCATTTATGATCAAGGAAAAGGCGAAAATAGGGCTTGATGTATCAATTTTTTACTTTAACAGTTATGTTTGCCCTTATATGTCAGGTACTGTTAAGTGTCCTTAATTAAATTTACTAAAGAACATTTTCCCTCTGTGCCTTCCACTTTACAGATGACTGTGGTTGTTCTTTATACAGTTGTTTATAAAACCGCGCTTTTTATCTAGGCTGGCCTTAAACTTTGGATCCTGCGAGTTCTTGGGATGTATCAGTAAATAAACCCTGCCTACATTTTAGTATTATATGATTTGCTTTTGGGCCATTTCAGGTGAAGTCTAGAACAAACTAGCTTTGTACGGATGTTTCTTAGGAGCGCTGGCTGGACTCCAGAGAGTTATCGGCACATGTCAAGTATGGTGGTACAGGCCTGTAATCCTGGTACTCAGGCGGTGAATGCCCTAGGGTCAGAAATTCAAGGTCATCCTCAGCTACTTTGTGAGTTGAGGCTAGCCTGGGATGTGTGAAATTCTTCCCGACACTTCAGAGCTCCCCCGCTGGAAAAAAGGAAACATTTTTATGTTTTGAGCCTTAGAGAAATCACTTTTGTAGAGACTAGCAGACTAGGATAGCTACATTGTTGTTTTAATGTTACAAGCTCCGCTTTGTATTCTTAGGTCTACAGAGTGATCATGAGGTTTGATAGCGCGGTATTAGAGAGCCTGCTGGTGTTGGCGCACACCTTTAATCCCAGTGCTTGGGCGGCAGAAGCAGGTGGATCTCTTGAGTTTGAGGCCCACCTGGTCTACCATGAGAGTTCCAGTATGGCCAGAATTACACAGAGAAACCCTGTCTCAAAAGAAACAAAACAACAAAAATCAAGGCATTAGTGACTTTGAGATTAGGGCTACAGACGCAAGTATCTTTATATTTTCTGCCAAAGGAAATTAAAACCCGAATTGAGAGTAGGGGGAAGGACTGAAAAAGGAGAAGGAAATGAATAATTATTAAAAGGTTATTGAGTGCTGGCTACAGATCTAGGCTGCCCCCAAAGCCCTAATAATTGGCAGATGCTGCCCCTTCTAATGTGTTCCATGCAATTCTCTACAGCCCCTTGGCTACCTCACATTCTGGACTTTACTAGTTTCTTCTATTTGAATGAAAATGGGTACCAATGAAGCATGGGTACAAGGGTAAGAAGTTTATTTTAAACTGCCAAGGCTGTCTCTGAGGAGAGCAGCAAGATGCGGGGTGGGGGGATGTAGGGGGGTATACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGATCTTCTGGGTTATATGGAAGCCATACCTGGGCCTGTGGGCTGGGTTAGGGGGTGGGGGACTTGTGAGTATGGAATAAGGAAGTGTGGAGGCTACCATTGACCTTGACACGCCAATGAGAACCACAGAGATATGTTAATGTATCCCTTTTGCCAGAGATGAGGGGAAAACTTAGCACATAGGAACTATTTCAGACTGGGGAAAGGGATTTCTTGGCGGGCTTGGGGGTGGGGTGGGGTTGGGGACGACGACTGACATTGTTTCTGGTCCTGCTTGGTTTTACTCTGTTCATGGTACAGTAGCCAGCATGACAGTTGGATCATGTCACTCTCCTACTAGAACTTTCCATGTCCTTCCCTCGAAATGAAGGTCCAAACAATTTCTTTCCAATGCCCATCAGGGTGCCTGGTGCAGTGGATATCTTGGAACTCTTTTTCTTTTTGTAGAGCTACACTGTTTGAGGTGCATCTGCTTTTGCTCCACATACACTTGACCTTTATCTCATTTTACTCGGCGATGCCGAATTCTTTAGGTTTCGCCCGAAATGGTTCCTGCTGAGGGGAGCTAGTTTTTCTGTCTAAATTAGGTCTGAAAATAAATAGCCTCAAGACAGCAGGGGGTTTTGTGTATCTTGATTCCTTTCTGCTGTGTTCTCAGTATAGCACTTGGGACTCCTCCTGCATGATTCTTGCAACCCTCTTCATTGGCATAAGCTACATTTTTACTCAGTAGGGAGTTGAAGTACAGAGTAAAAAGGTTAACTTGATCAAAACAAAGAGGCTTGGAAGCAACAGGTTTCTAGTTTCAAGGGATTAAGGTCATCTGGCAGGGAGAGAACCTGGGCTATGTGATACACCAACTAGGAGCTGACTTGGAAGCCACTTGGTTGAGAGCAGTTTGAGATTGGTAAACATGTGGTGGCAATCAGTGCTGACATTCTTCTCTAAGCAATGCTTCTGTGCTTAGACCCCAGCTAGGTGAAGGTAGGGAAAAGAAGAGGAACCAGATTGAGATACGCACACACCCACCCACCCACCCACCTAGAGATTCTTTGAACATTAATTAGCATTTTTAAAGTAAATTTGAAAATTTACTAAAAGTTAGTATTAATTAAAAACATTTTTTTCTTTTTTTTTTTTCTTTTTTTGGTTTTTCGAGACTGGGTTTCTCTGTATAGTTCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCGGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGTGGAGTGCTGGGATTAAAGGCGTGCGCCACCTTTTTATTTTTAAAGCTTTGCTGGAGTTTGAACCCATGCAAAGTACATGGTCTACCGCTGTGCCTCCTCCTCCAATTACCGAGGCAGGGTTTCACGAATCCCAAGCTATCCTCAACTCATGTGTAACCCAGGATGACGTTGAACTTGTGCTCCATGCATTCCGGGATGCCAGGCCTGTGTCAGGGATCGAACCCAGGGCTTCCTGTGTGCCAGGCAAACATTTTACCAAGTGAGCTACAGCCCCAACCCATCTAAAAGGTCTTCATTTTCATGTCTTACATTCCCCCCTCATTACTGTTCTGGTTAGTGTCGTGCTTCTGGCTGTGGGTTTTGCTCGCCTGTTTCTTTTTCTTTGTGGCGGTGGAATTGATGCTGTTCAAGTGCTCTACCACGGAAGCCACAGAACTCATTTTCTGCAAGTGTCTTTTTGGACTTGTTTACAATATGTTTGGCTTAGGTCTGCTCTAATTCCTAGCCTTTTGCTGCTGTGATTCACGTGTTGGCACCAAGGGTGTTGCCTCTTGCTATTTCCACCGGCAGCCATGCTTCTCTGCAGGCAGCAACTTTTCGTTTTTGTTTTGTTTTTTGTTTTTTCGAGATAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTGCACCACCACACCCGGAGGCATCAGCTTTTCAAAAACAAACAGTGCTACACTAAAAGCATGTCAGCTAAGATTATGAATCATTATCTTAATGATTGGTTTGGGGCTTTATTATAACTCACTTATTCATAAATCCATTTGTATGTTTGTAAATTCCTTTAGGTTTGGCTCTCATTGTTTTTGATTGTTTGTATGGTTGTCTTAGAAACGTCTCTTTTGTTACATCCTTACCAAGTCTGCACGCTTTAGGAGACTGAACTGTTCTTAACTAACAACTGACTAGTGGTTCTAAAGAGCATTTACAAGTGGCTTGAACTACTGAAGCTCTGACTTGACTTTGTAAGCAGAGGAATGAATAATCTGTGGCTCATCCTATAATCTCAGCTCTCAGGGCTGAAGGAAGAGACTGCAAGTTTGAGGCTAGCCCAGGCTGTATAGTAGAGCCTACATACTACATACTACAGACTACATACTACAGACATGGTAATTTCTTTCTTTTTTTTTTTTTTTTTTTAGTTTTTTTTCAACCTATTTTAAGTTTAAGACACAGAAACCCAGGTTGACCTTGAACTCATTATGTAGGCAAGGGTGATTTTGAACTAAAGATCCTTCTGCCTCTTCTTTTCTAATGCTGGGATTATAATCTTTTTTTTTTTCTTTCTTTTTTTCTTTGTTTTTTCCAGATAGGGTTTCTCTGTGTAGCCCTGACTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGTGGAGTGCTGGGATTAAAGGCGTGTACCACCACGCCCGGTTTTGGGATTATAATCTTAAACAGTCATGTAGCACCATGCCTGTTTTTATGTGGTGTTGGGGATTGAAAAAAAGGAGTTTGTCAGAGAGCACAACTGGACAATGTGCAGAGAGGGAGAGCCACTGGAGCACGAGATCCTCCATGGGGTGCCTTCATCCAACCCCTTTCTGGAAGGCTCAGGATGGGGAAGTAGGGGGAAAAGGAGGCTGCAAGGTTGGCCAGAGGTGACAGATGACTCCAGGGTGTTAGTGCCTTCCAGACACAACAGGACAAATCACATCACAGCTCATATTGTAGCAGCATGTTCAAGACATACAGGTTCAAGTCAGATGGGCTCCTAGTACGGAGAAGAGGAAATGGAGGTGAGATCCCACTCCTAAGCAAGAAACTACTTGTAATTTATATCTGCTGACAAAGGGAAAATCAGTTTTCTCCAGTGGAGTCACTGTATATTGACTACACTCCAGGGCAAACCCAGGAGCCATCAGTCAGTTAACACAAAGCGAACTCCATGGTTTTATTTGTTTAGAGACCATAAAGTTAGAAGGATAGGGAGGTGGAAGGGTCTGGGAGGAGTTGTGGGAAGGTTAAAAATATCCAAGTACATGAAAAAATTCTTAAGAGGAAAAAAAAGAGAGAAGGGGTTTTGTTTCCAGTATGGAAGCACTCTGTCTACTGAGCCACATTCATAGCAAAAAAAAAAAGTCTATATTAAAAACATTTTTCCCTCAACCTGGTTTATATGTTATATAATGTTTCTAAAATACTTTTTTGATTTTGATGATCTTGACATCAGTATAATCTGTAATAACTTTTTAGTCATAATTCTCTCTCTTTCCTCCCTTCCTCCTTCCTCCCTCCCTCCCTCCCTCCCTTTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTCCTTCCTCCCCTCCCCTCCCCTCCCCTCCCCTCCCCTCCTCTCCTCTCCTCTCCTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTTTCTTAGATCTATGTAGCCCTGGCTTGGAATTCTCTATATAGACCAGGCTGGTCTCAAGCTCAGAGATCCCCTGCCTTGCCCTTAAAACTGGGATTAAAGGTGTTTGTCATTTTTCTCAGCTTTATTTGCTATTTTCAAAATTGTTTTATAAATTAAATTAGAAGATTTACTTAACCTAGAGATTTCAAAATTACTAGAAAGCATGAGTGCAGGTGGAGGAGAGACACTTAGTGACATGAGTTGGGGGTTGCTACTGTTTTGTGTAAGTTCTACTGTGGGGCTTTTACAGACCTGGATTTGAATCTAGTCTGTACGGTTTTGTCCCTAAGGAAGTAAAAGAAAGAATTTACTGTGCCCTTGTTCTGGTCCATTGGTACTCAACCTTCCTCATGTTGTGTTGACCTACCCCCTGCCCCCCCCAACCATGAAATTATTTTTGTTACTACTTCATAACTGTAGTAATTTAGTAACTGTTATGAATCATAATGTAAAAATCTGTTTTCAGAGGGGCTTAGACGACTGACCCCTGTAAAAGGGTTGTTTGAACCCCCCAAAGGGGTCACAACCCACAGGTTGAGAATCACTGTTCTAGCCAGATGATGCAACGTATTTTGAGAGACTATTCAGTGATTATTGTGGTTAGATGTGAGCTGGATGACGGGCAACACAGTGCTGGATAGAGATGTTAGGGAGTCCTGCCAAGAGCCTTTGCAAGGACCTAGAGTTTTGCTTGACATCAGCTGGAGAGCTTTGTGTAGAGACACAGTAAAGGGCTTTGATGTTACTGGTCGGACTAGATACATTTAGTGCCTTTGAAGTGGTGGATTATAGGTGTGTTTGGTAGGATTCTTTGTTTAATCTGTTTACAGACAAGGATCTCGTGTAACCCAGGCGCTGGTCTGGAACTTGCTGCGTAGCAGAGGATGCCCTTGAACCCTCAGTGCTGGGATTACAGGCTTGTGCCACCACATCCAAATTTGTAGGTGGCAAGGGTTGAAGCTTTGTGTCTGCTAAGCAAGCACTCTACATATTAAGCTATCTCCTATCCTGGATTTAGTTCAGTTTTGATTTTCTGGTATACATTGGCTTGGGAATCATTAGAATTAAAGTCAAGTGGTGAGTGGTTATTTAAATACATCTTCTATAAATACTCATGTATGGGTTCACTGAAAGGAGACTCGGCTTTTTTGTCTGCACTTGGCCTTGGCCTTATTAACGTGTGATTTGTGTGTGTGTTGTTAATGGTCCAGCTCCTGTGTTAATACTGTGACTACCCAGGGCAGTGAAGGTTTTATCTCTGTTAGCTTTTATCTGGGCTTTGAGCAGAATGCTGTAATCTGTTTCAGTTTTCTGGAATCTATAGGGAAGGCTGGGGGCCATGCATCCACTCATTCTGTTGACCTCCGTGAACTGTAGAAGTTAGATGGTTTTATAGTTTGTCTGTCTGTCTGGTTGGTTTGGTTAGGTCTCTCTGTATCACAGCCCTGGTGTCCTGGAACTCATTTTGTAGACCAGGTTGGCCTCTAACTCAAGGTCCGCCTGCCTCTGCCTCCTGCGTGCTGGCATTAAAGGCACGCATCAACATCAGCTAGCTTTATATTTTCTAGGTACCTCAAATTCTACATGGTATTGCTGCCTTCTCCAAATGAGGAGGAATTCTGAGTTGGTCTGTGTATCTCAGCTTAGCTTTGGGGAATAAATGAGATGATAATAGTTACTACCTATTGAACTCTTAAAGCAGACCAAGGATAGCTAATGCCTTTTTATGTATTACGTTTTGTGTGTGCTATGGGTTCAGGGAGGAGGAACTAAGATTCTCTTACAATGACAAGCCCCATGCTTGTTTCCTTTTTCTCTCTAATAGGTTATTTGATTTTAAGTTAAATTTTTGATTAGAATTTGATGGCTTTAAACCTGATTTACTGACATTCCACGTTTGTGTTTGTAG
Seq C2 exon
GAGCTGACCAAGGCCTTGGAACAGAATCCGGATGACGCACAGTATTACTGTCAGAGAGCTTATTGTCACATTCTTCTTGGGAAATACCGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022024-Sugt1:NM_026474:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.161
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PU(21.1=60.0)
A:
NA
C2:
PF134141=TPR_11=FE(52.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: