HsaINT0161631 @ hg19
Intron Retention
Gene
ENSG00000165416 | SUGT1
Description
SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae) [Source:HGNC Symbol;Acc:16987]
Coordinates
chr13:53227181-53231757:+
Coord C1 exon
chr13:53227181-53227238
Coord A exon
chr13:53227239-53231666
Coord C2 exon
chr13:53231667-53231757
Length
4428 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
CCACATGTTTGTTTTTGTAGGAG
3' ss Score
7.78
Exon sequences
Seq C1 exon
GTTTTTCCAGAGCTTCTCGGATGCCCTAATCGACGAGGACCCCCAGGCGGCGTTAGAG
Seq A exon
GTGAGAGAGCCCATTTCTGCTTCCTCCACTCTTCTTAGGGGAGCTGGGCCACTTCGGGTCCCCGCTGACCCGCCTTCTCCCCGCACCGCCGGACAGGGACCCAGGCTCTTGTTGATGCTGCGTCTCAGCTCCGGTATTGAGATTCTCCGTCTCTTTTCTCTGTTACACGGTAGCCGCGTTACCCCAGACTCCTGTCTTGCCCTTTCCACTCCCTACAGCTCCTGAGAAAAACCTCCTCTATTTCTTGGGAGCATGGTTGGCATTTGTAGTTTGGCTGAAAGGATTTTTTTTTTAATGACATTTATGATTAGAGAAGTGGACTCTGGGCTCGATGAAGTTAATTTTTTCGTTTGACAATAATTCTTGCCATTCTTACGTAAAAGTGTCGGTATGAAGTCAGTCTACTGGAGCAAAACCCTTTTCCCTCACGTCCCTGAAACTTTCCAGATGTCTTATCACAATTCATTATTCACTCATTTGTATATTCATCAAAATTTTTTTTTGGAGTGGCTGTGTGCAAAGGCGCTGATTGCTGTGGGTTAAAGTCTTGGTTATATACTCAGCTAACCTAGAAATCACTTTTTGTAGGTGTGCAATGAAGGCAAACCATAAAGCTGTAAAGGAATGTAAAAGATCAAGAGTTAAATAATAAGAATTAAAGGAGAACCTAAAGATAAATGATGCTGCGGGTCACAGAATTTAGCCAGGAGTTTTTGTTTGTTTTTGCGTTAAATCACAGAAAAGAGGAAACCTGTTTTGCTGTTACGTTTAACAATTTGAGGCAAGACAGCGTCTTTTCTAGCTATGACTTTTATAAGAAATGTGCCACATGGTACTAGAGCCTCCGTTGAGGAGATCTTTGAGTGGAGATTTGAAGGAACAAGGGAATTAACTTGGAAGCTCTGGGGAAAGAATATTCCAGGCAGGACCAAGAGCCAGTGCAGATCTTGAGGTAGGAATGAAGTTGGCCTGTATGTGAAGCAACAAAAAGGCCCTTTTTATTAGAGGGCCCATTTGATTAAGAGAGGTTGGACAGGAAACTAGGAGCCAGGTCCTATAAGGCCTTTTAGGGTCCAGGTGTGTTTTTTACACCTAAATATATAGACCTTTAGATACTGGGAGTAAGGCTTCTGGGATGAGTTTGGGGATAATGTTACAGGAAGCACTGAGAATTTTTCTCCATAATTTCTTGTATTAGCTAGACAGCTATGACTTTTAATTTACATTTGTTATTGTCGTGTTAGACCTAGTGCTTCCTTTGGGAATCCAGTTTATATAAAAGTTGCTTTTAAACAGTATTAACATAATGAATTTTATTGTCACTTTCCATCTTCTTTTACTTTAAAAATTTTTATGGAGGCATATATGATTTATGTAAATAACACAGATTTTAAGTCTATAGTTTGATGAGTTTTCACATGTTTACACCACCAGATTAAGATACAGAGTATCTCCATTCATAATGCTCCTTAATGCGCCTTCTCAGCCAGTAATTCTTCTTACTGTCCTGCTGACTCCTGCTTTGACCTCCATCACCATCAGTTAGTTTTGTTTGTTCTTGACTCATAAACAGAATCATACAGTAGGTGCTTTATTGAATGTAGACACTCTTTTTGCTTTAATGATTACATAAGTATACATTCATATTGTGTGAAGTAGTAGTTCTTTCGCATTGCTGTGTAATATTCCATTGTATAAATATATGTTGTATAGCCGTAAGTACGGCGCAATTTATTCTAACAGTGGACATCTGGGTTATTTCTAGTTATTAGCTAACAAAAAGCTTCTGTGAATACTCTTGTACATGTATTTTGGTGAACACATGCATTTCTTTTGGTTGTATGTACCTAGGAGAAGAATTGCCTAGGATAGTCATGTGGCTAGTATTAGTACCTTGGTTTTTAATGTATGGCTCTTGGACCAGCATTATCAGCATCACCTGGCAATTCATTAGAAGTGCAGCCGGGCGCGGTGGCTCACGCCTATAGTCCCAGCACTCTGGGAGGCCGAGGCAGGCGGATCACGAGGTCAGGAATTCGAGACCAGCCTGGCCAACATGGTGAAACCCCGTCTCTATTAAAAATACAAAAAATTAGCCGGGCATGGTGGTGGGCAGCCGTAATCAGCTACCTGCGAGGCTGAGGCAGGAGAATCACTTGAACCCTGGAGGTGGAGGTTACAGTGAGCTGAGATCGCGCCATTGCACTCCAGCCCAGGCGACAGTGAGGCCAGGCCATCAAAGGCATTAAATCCCAGCACAGGGTTTTCAGTTTTATCATATGATTATGGAGATCCGTCAAGAATTTGGAGGAAGGAAAATGAAATTTTCTGAATTACAAAACCTACTTTAAAAGCAGAGTAGATAGCGAATTGGAGGAGGCACAAGGGATAGTGGATAGCAGGAAGATGGTAGTGCAGACCGGGTCAAAGATGAATATTTGCATGTAGGGCAGTGATTGAGGGCATGGAGGTGAGTTGTTTTATGTAAAATGCACCGGACTTGGTGACGATTAGAATATAAGGGATGTCTCCTGAGTTTCTGGCTGGGGGAATGTTGTAGGAACTGGTGCCATTCATTTAGATAGCACTTAGGATGATAGCACTTAGAAGATTGCCTTCAGCATGGGGGAATAGGTTTGAGGATAGAAAGTAGTTTTAGATTGTGAATATTTGTATATGAGTTGCCTCTGGGACATTTCAGGTAAAGTTTAGAGAAAACTATATGCTGATGTTGCCCAGGACCACTGTCTAGGCTCAAGATAGACTTGAGTCATCAGCATGCATCAACACATATGTGAAGCCCCCCAGTAGTTAAGGAATCAAAGAATGTTTGTAGAGGGGAAGAAGTCTTAAGTACTGAGCCCAAGGAGAACATTAGTTTTTAAGAGGCAGCAGAATGGTAAGCTGAAAGGCCTGGTTATTATTGTCAAGGGCCACAGAGAGATCAAGTCAGATAGGAATCAGTTGGATTTTATAAGGGGTTATTAGTGACTTTGAGAAGATTAAGACTAGAGAGGCAAATATTTTTGTATTCTATGGCAAAGGAGATGCAGTCAAAGTAGAGACTGGGGAAAAGGCTGAAAAAAGTCTGCAAGAAGAAAAATCAATACTTTTCATTGAGTGATTACTGGATGTCACATACAGATCTAGGCAAGCCCAACACCCTGGAGTCATCTTCAGTTTCTCTTATCCCACATGTTCACCCATTAGCAAGTCTCTCTGCTTCTAATATGTTCCAACTTAATCGTATTTCTTTTCATCACCTCTGTGGCTAACATCCTTTTCTAGCCTAGACTTAATGTAATAGTTTCCTAAGAAGTCTCCGTTTCCAGTCTTGATTTGATAATGTATTTACCATACTGCAGCCAGAATGACATTAAAAAAAAGTAAATTGGACCATGTTCCCCTTACTAACAGTGAACTTTCCATGGCTTTCCATCAAACGTAAGGTCCAAATTCCTTATAACTGCCTGCAAGCTACAAAGTGAGGCCCTTAAAGTAGCATCTTACAGCTTCTTTGCTCTCTTGATTTGAGCCTTACTTTCTGTTGATTGACTGTAACCCCATGTGAGTTGAGGAGCATCTGTATATGTTGCTTTCTGAGAGTCACACTACTAGGTTAAAGCAAAGTCAATGATACATGTGGCTCTTGAAATAATTTTACCATTTAAGAAAACTACCAAATCCCTAGAGTTTGTAGGCAGTTGGCAGAAAATAAAAGTGTTCCTGCACTTGTCTTTGATCTCCCTAATTGTGTAATCTCTTACATCATTATTTTTCCAGCTACCACACCTATATGTTGTGACTGCACAAGTTAAAAAAGTTTCAATCTCTAATGTTAACTCTTGGTAGTTGACATAGCCATCTATTAGATTGTATCTGGGCTTTGAACAGAATATTTAGTTGGGTTTTATTAGAGTTGTGTGCTATTGTTAGAGGCTAGGAGAGGGCCAGGTACACTTGATTGTGTATGTATTGATTGTCTTAACCTCCCTGAGTGCTAGATTTAACTTCTGGTCTTTTTTTATTGCACAGCTTAACATTTTCTAGGAATCTCAAATTCTATATGGTGTTTGAATCTTCTTCAAATTAGTAGGAGGAAATCTGTAATGGTCAATGTGTAACAATTAAACTCTTCAGAATATATGAGCTGATAATAATGATCATTTATTAAGTTCTATAGACCAGGAACTAAAAGCTTTACGGTACAGAGATGCTACATTAGATTGCCTACTTTTGGGAGGAGGGGCAAGAGAAGTGGGGGAGATATTGATCCTTTTATAAGGAAAAACTCCAATATTATATCCGTGTTATCTTTCCTCCAAATAGCTTCTGACAATAAGTTACTTGATTAAAAATTATGTTTTAATTAGAATTTGATGGCTTCTTACAAACTTTTACTGACGCTCCACATGTTTGTTTTTGTAG
Seq C2 exon
GAGCTGACTAAGGCTTTGGAACAGAAACCAGATGATGCACAGTATTATTGTCAAAGAGCTTATTGTCACATTCTTCTTGGGAATTACTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165416-SUGT1:NM_001130912:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.140
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PU(21.1=60.0)
A:
NA
C2:
PF134141=TPR_11=FE(52.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)