GgaINT0107553 @ galGal4
Intron Retention
Gene
ENSGALG00000014178 | SCUBE1
Description
signal peptide, CUB domain, EGF-like 1 [Source:HGNC Symbol;Acc:HGNC:13441]
Coordinates
chr1:68729944-68732286:-
Coord C1 exon
chr1:68732170-68732286
Coord A exon
chr1:68730103-68732169
Coord C2 exon
chr1:68729944-68730102
Length
2067 bp
Sequences
Splice sites
5' ss Seq
TAGGTACGT
5' ss Score
8.17
3' ss Seq
TGTGGTTTCTCTCATGAAAGGAG
3' ss Score
4.29
Exon sequences
Seq C1 exon
ATTCCTTAGCCCCTCCAATCAAGCAGAAAGCTCGTTTTAAAATTAAAGATGCAAAGTGCCACTTACGGCCTCGCAGCAAAGAAAAAACAAAAGATGCTGGGAAGCAAGCTGTGTTAG
Seq A exon
GTACGTGGTTTCTTCTAACACATCAACAGCTTCGTAATTTTTTGCTTGTTTGTTTGCTTGTTCATGTAATTTGTTTTCACATCTCAGTCCGAAAACATGTAACGCTTTATATATTTGAGATCAAGTTCCACTCTCTAGCTGAACAGCGCCATGAGTTTGGATACAGCAGTGTTGAGATGTCACCAGATGCTTTGAAAAATCTTCGTCCAAAACTACATGAATTTGGAATTAAGCTGATCCTTTTTCTGACATGGATAATGGCAGAAATATCTTGAGACAAAAAGCTATGACCGGTGCAGTTACAAGAAATAATGTTGGTTCAGTTTGTTTTTTCCAAGCTAAGTTTATAAAAGAAAACATACACTAGCAAAAGCTATTACTCATTTGCATTATACTGGATTAGTATCCACTGCAGCAGCAAGACAACCCCTATGTAGGAAAGTTATAATCAGAATCTGATTTTGCATAGCCTTAGATCATATGTTACACTGGAATGAGTAGTTATGCTGTGAGAAGAAAGATTTCGAAGAAGATTTAGACATAATTACAACAAGTCTGAAATGTAAATAAGAAACGATTGGTCAGGCTACATCAGAGCATTGAAACGCTACAAAAAACTCATGACAGTAAGGTTTGGGGCGCTATTATTGCTGATTTTTAACTTCATTTTTAAGGTTAAACAACACATTTTAAACAGCATGAAATTTATTTCTTGTTCTCCATCCCCTTGATAAAACGGAGTAAATTAAACAATTAAAGAGTATCTTGGTGTTTTTGCCTTGCGTTTCCAGAGCTGAAATATCTGAAGTACATTTACATTTAATATTAACTCAGAATTTTCTGGACTTCCATACACAATATTGGTGAGACTTCAACAGCTCAGATTGCTGCTTGGAGGAACTTAGCAGCTAACAGAAAATGTCTACTGGTGTTACATTCTCTGTTGTGAGTCTGTCTTAGCACTCTTGCTAAAGCAAAGTGAAGTGAATGCTGAATAGAAAAAATAGCTAACCCAAAAAATGCCAGTGATTTAAAGACTTTATGTTTTCAATTTTGGAGTTGTAATTTAACTTTATCGCACAGTCTAAACATTCATATATATAATCTCCTTATTTTTCAAGCATTTGGTTTAGACAAGGCACAGTTGTCAAGATGCTCACCTTGTCCTTACGTATTCTCTTGCTTTTAATAAGATGTGATTGTTTGACTCATTTTTAAAGTCACAGATCTTTTTTGGTCCATAGAGTCACAACTGGACTGTATTTCTTGGATGCATTTTTTGTCCTTTGCTTGCTTTGCTCTGCGTGCGTTACATCGTCTGAACTCCTGAGTCTAACAGTAAGATGATACCATAGAACTCCACACTCAGAATGAAGCCCTTCTGATGGTTTAGGTGCTAGAAATGTCTCCCTGAGCTAGAAGGTTGCTCACCTATCAAAATAAGGATGTTTTTCACACAGATATATATTGAGAAGATGTTTCTGTGATCGTGTCCCAATGGACTGTGGCCTTTCTCCTCAGCAGCAACAATTAATTGAAGGCTGCATTCATTTCTTCTGTCTTGTGCTTCCGCCTCAACTTTCCAATGTATTTTCATAACTTCCCAAGCAGTGGCTTTTCAAACTTTTGTTATCTGGCGATTGTATTGCTCAAAGAGATAGAACACCAGTTAGTAGTTTCTTGAGGCCCATACTTGGTGTGATTTAGTCTCAGGCCTGCTGCTCTAATGAATTTGTGAAAACTCTCTTGCTTGGTATAACCACGAAACAACTGTATGCAGTATTGCGGCTCTTACCTAATTTCTGTAAGGAGCTTCCTAATCCTTAAACAGAAAAGAATAGGGAAATTATAGGCATTATAGGTATCACTAAGCAGCTGAGCATCACCACACCAATGCTTTTGCCTCCTGCTTTCACCAACAAAAGGATCGAAGTGTCTAACTGCATGTGAAATGTTACGAAACCTGTCACTGCATTAATAATAACCCAGCTGAGATATCGCTCATTAGCCTCTCACTTGCTACCTTGCTACTTGATTTCTTTTTTTGTGTGGTTTCTCTCATGAAAG
Seq C2 exon
GAGGTCAATTCCCTTGTACAGACAACTGCCAGGTGACTTTTGTGAATCTCAAGTGTGATTCCTCCAAGAAAAAGCGCCGGGGCCGCAAGTCACCATCAAAAGAAGTGTCCCATATCACTGCAGAGTTTGAAGTGGAGATGAAGTCAGAAGAAGTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014178:ENSGALT00000022933:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.225 A=NA C2=0.333
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]