GgaINT0108360 @ galGal3
Intron Retention
Gene
ENSGALG00000016823 | F1P3E8_CHICK
Description
NA
Coordinates
chr1:141564472-141564869:-
Coord C1 exon
chr1:141564858-141564869
Coord A exon
chr1:141564539-141564857
Coord C2 exon
chr1:141564472-141564538
Length
319 bp
Sequences
Splice sites
5' ss Seq
GATGTTAGT
5' ss Score
-2.8
3' ss Seq
AAAGTTACTTTCTTTAATAGGCT
3' ss Score
6.76
Exon sequences
Seq C1 exon
ATAGTCACAGAT
Seq A exon
GTTAGTGGTTCAAATTAGCAAGGTGTTCAGCTATCCATTAAGACACTGCATGTACCTTGGTAAACTTAGAACACAAAATAGCAAGGTATGTGTGAACTGATTTTCTGCTTGCTTTTAGGAACGTGTTATTTATAAAAATCAGCTGATTTGAAAGTTTGGCTAACATAATGCCATGAGCAGCGTGGTTACATAAGCGGCAGATCAGTGAGGAAATGTGAGTGGTGGCAGCAACAGAGTCTTCTGGTGTGATTTCTTCCCTCTTTAACGATAAAAGGCTGTCAGTGTTTGTCAATTTAATAAAAGTTACTTTCTTTAATAG
Seq C2 exon
GCTGGACTAATTGAAGCCAATGGAGAGCTTAAGGTGTTTATAGACCAAAACCTAAGTCCTGGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016823:ENSGALT00000027160:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]