GgaINT0108360 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1P3E8]
Coordinates
chr1:136673678-136674075:-
Coord C1 exon
chr1:136674064-136674075
Coord A exon
chr1:136673745-136674063
Coord C2 exon
chr1:136673678-136673744
Length
319 bp
Sequences
Splice sites
5' ss Seq
GATGTTAGT
5' ss Score
-2.8
3' ss Seq
AAAGTTACTTTCTTTAATAGGCT
3' ss Score
6.76
Exon sequences
Seq C1 exon
ATAGTCACAGAT
Seq A exon
GTTAGTGGTTCAAATTAGCAAGGTGTTCAGCTATCCATTAAGACACTGCATGTACCTTGGTAAACTTAGAACACAAAATAGCAAGGTATGTGTGAACTGATTTTCTGCTTGCTTTTAGGAACGTGTTATTTATAAAAATCAGCTGATTTGAAAGTTTGGCTAACATAATGCCATGAGCAGCGTGGTTACATAAGCGGCAGATCAGTGAGGAAATGTGAGTGGTGGCAGCAACAGAGTCTTCTGGTGTGATTTCTTCCCTCTTTAACGATAAAAGGCTGTCAGTGTTTGTCAATTTAATAAAAGTTACTTTCTTTAATAG
Seq C2 exon
GCTGGACTAATTGAAGCCAATGGAGAGCTTAAGGTGTTTATAGACCAAAACCTAAGTCCTGGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016823:ENSGALT00000027160:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF059717=Methyltransf_10=PU(1.3=25.0)
A:
NA
C2:
PF059717=Methyltransf_10=FE(29.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]