GgaINT0108942 @ galGal3
Intron Retention
Gene
ENSGALG00000012890 | DGKI
Description
NA
Coordinates
chr1:59625740-59629364:+
Coord C1 exon
chr1:59625740-59625800
Coord A exon
chr1:59625801-59629250
Coord C2 exon
chr1:59629251-59629364
Length
3450 bp
Sequences
Splice sites
5' ss Seq
ACGGTACGT
5' ss Score
11.34
3' ss Seq
TTGCTTTTCTGGTTTTATAGGTT
3' ss Score
9.71
Exon sequences
Seq C1 exon
GCTGGAGCTGTACAGAAAAGTGCCAAACCTGCGGATCCTGGCCTGTGGCGGGGATGGAACG
Seq A exon
GTACGTGACTGCTGCCTGGCAGCCCTCTGGTCATTGCCAAGAGATTAAATTGCTCACTACATGGGTTTCCCACTTTGTGATGCCTGTAGAGCCTGAAAACCTACCTTACGCTGCACACATCTTTTTATTTTTCTTTTCTATGTGGATCGGCCTGCTTACAGACGAGACCGTATTCTTACGTACTAATGTCCTAGCTCCTATCTGCTTTACGCATTGATTTAGTACAACTTAAAAAATAGAGACAACCATTGTCAGCCTCCTCCTACTGAGGGTCTAGCAGGTTAGATCAGTGTCTGGGGGTCATTTAATCTTAATTTTCATCTTAGTTTCTACTCCTCTCTGCTGTTGTTTTCACTGTGCCTGAGTACAGTCAATTGTCAAATGCCTCTAGTTTCCTCTTCTTTACAAATCCACTGTGAGGAAGTTGTCATGCTACTTGCCTGTGATGTGGCTGATCTCCAGATTCAGTATTTTCTTTGCAATTGAATTACTGTGTGTCCTTGGAAAAGGGAGTAGTGTCAGATCTTCAAAAGATTTGGACACCTTCAGATGGAGGCAGGCTCTGCAGTTTGGGACTTGTAGGCCAAGAGTGGTACTGAAGGAATTACAGCTGCTTTGCTCTTGCCTGTTCTTAAGAATATTGTAATTCTCACTCTTTACCACTGACTGCTGAAATACAGTTAGAAAACTCACCTTTAGTCTCCATGAAGATCAGTTCCCCATACATACATTTGGTAATACTTGCAACTATAGTAACTGCAAGGTGCAATGGCTGGCCAGGATGTATAGAAGTACATACTCATCACACTGGGAGGCTTTTTTTTTTTAATTATTATTATTTTTTAAATGAGCTGAACATACTCTCAGCTCCTATCTGCTTCTGTGAGTACTTCTGAAACCCTGGATGGTAGAGGTCATTAATACTAGTGCTTTCCCCTGAAAGGCAAAAGAAACAGCGTGATTTGATTACCATCTTGCTGGCACCTGGGACAATCAAATGTTACTCTTACTGAATTCGGAACACTCCTTGAGAAACTTGTGAGGTATTACTTTAGCAAAAAATAGAGCTTCAAAAAAGAGATGTTTTCAATCTGTTTCTGAAAATGTTTGAAGCTTCTGTGTGAGGAAACCAATATTTTCATAGGAGAAAGATCTTCATTCTAACAATGTTAAAACAGAAATAAATACAAGTACATTGAGCCCTAGCATCCTGTGTTTTTTCGTTTGTTGAGCAGTGAAAGCAACAGGGGGCAGCACCTTCTCATTGGTAAGAGCAGCACTTCACTGTTACATTCGCTGTTGCTCAGTTTGAAGCAAGTTAATATCCAGCTATTCCCAAAGCCATTACATCTAGAAATGAGAAATCTGACTCAAATGGACTTAGTGAATATTCAATGAGACCAGATGTTATCTTGCATTATTGAGATGAGTCAGAACTCATTGTAACTTTTCCATCACTGCTGTTTGCTGTTACTTTCCTGGGTGTAAGTAGAAAACTTTGTTTTCGAAGCAGTCGGGAGACTTCTGTTTACAGGGAAATCTCAGTCTTTATCATCCTTTACTGTAAAAACATCCTTGACTCTATGAGGTTTAGAAATGACCTCAAATGAAAGAGCAGTTTTGCAAGTATAAATGAGCAATTTGAGGTTTTGGTTAAAACTTAAAGTTGAAAGCATTTACAAAACTGGTTGGTATTTGTAACGTTACCTGCCCCAGTAGCAAGCTGAGGCACACATGTATGGATTAAGTCAATGGCAAAGACAAAGGACTCTTTAGCAAGTCTTGGCCACGTGGGAGTTATCAGAACTCTTTTCTCTGTCTTCCAGTTCACAATACCAGAGGATTGACTTTCAAAAATTAGATGATGACTTACCTCTGACAATCCCTTAAGGACTTTATTTAGTCATATCATAGGACCTATGAAAGACTTAAATAGCTTTGGTAACTTCCAAGTTTGTGAAATTTTTAAGTTATTCACATGACTGTTAGACAGTGATCTGTGATGTGAGATCACATCCCACATAGACACTTGAATAACTGCACAATAAGTTATGATAAGTAACTGTTTAATAAATAATAATTATATAAAATTAATTTTTCCATGAAGAGACTTGTAGAGAGACTTATTCTAGAATATCAAATATGGTGGTTGTTGGCTTCTTCTCATCCTGCATCAGCCCCCCCCCCCCCCCCCCATCCAGTACTTCAGATTCAAGCTGCAGAACCAAATACCTAGATTTTGGTTTCTGGAAGCTCCAGTTTCATTCCAATTTGGGATAAAAATCTATCTGAAATCATAGAAATATTAGTTGTGAGTGGGAAAAATCCTGTCCAGGTGGAATCTGTCATTCAGTTTTATGTCTTATTTAAAAGCTCATAATATTAGTGAAGATACAATCTTTGAACACTGACATCAGAAAAAAAATTAGTCACTATTTTCTTATTTTTATGCTTTTCAGAAATTATTCAAAATGCATGACATATTTTCATAGTTTTTGTTTGTTTGTTTTCAAGTTGAGAAATAATCTAATAGTGCTATTTTCTTTTAGCGAGAGTGTCAGGCATATACATTTTGAGAATATTTTCAGCAATGCTCCTTTCCCTGTTGGAGAGTGCTTTTTAATACAAGTAAAATATTTTACATTAATTTGTACCTATGTCAGATTTGTATTGAAAAATTTTAGGTGGTCTAGAGTAGAGAGATAATGAGAGAGAGGAAGATGCAGCTCTCCGTCGGTGGTGGTGCAAAAGATCCAGGTTCATTTTTCCAACCCCCAGTCTTTAGCCCTTGGTATTATAGTCTTTTATTCTAGCCCTCTATTGATTATTTATGTATAATTATATATATCTGCTTTACTCAGAGCATAACAGTTCAGCTCTAAAGTCTCTCTTCTGGGGAATGGGAGACCTGCGGATGTATCTCTGCTTGACTTGATCTGCACTTTGTGTTCCAGGACATGCTTTTCTAAAGCATCTCTTGCATCTTTTTCCCTTTAGTATAAGGGTGATTTAAAATTTTAATCTTAAGCTGTCTATATTATTCTTCACTAATTTTTATTTTTATTTTATTTTTATTTTTTAGTTAATTATTACTATTTTTTTTTTTTTTTTACCAATTTTAACATTTTTGAGAACAGTTTTTTAGGCAGAAACTTGTCCACCCCCTTTCTTTGGGATCTTGGTATGCTATTAACAATAGACGGAATTTGTGTTCTATTCCTTCTCCTTATATGGAAGTTTCATGAAGACTGCTCTACCAGTTGTCTGCGAGGAAAAACCTCAGATGAGGCAGCTGTATATATTGTCTTTTCTTTTTCCAATTTATTTATCTATTTATTTTTTAACATGTTCTTTTGTGTGATGGCAATTCAGTCAAAACATGCCTTTCTCCTCCATTCCTTCCCTTTTAATCTTCCTTACTAACAGTTTCTTGCTTTTCTGGTTTTATAG
Seq C2 exon
GTTGGCTGGATCCTCTCTATCCTAGATGAGCTGCAACTCACTCCTCAGCCTCCTGTGGCTGTCCTTCCACTTGGCACTGGGAATGACCTTGCCCGCACCCTCAACTGGGGTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012890:ENSGALT00000021020:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.026
Domain overlap (PFAM):
C1:
PF0078119=DAGK_cat=FE(16.0=100)
A:
NA
C2:
PF0078119=DAGK_cat=FE(29.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]