GgaINT0108948 @ galGal3
Intron Retention
Gene
ENSGALG00000012890 | DGKI
Description
NA
Coordinates
chr1:59636252-59637906:+
Coord C1 exon
chr1:59636252-59636325
Coord A exon
chr1:59636326-59637794
Coord C2 exon
chr1:59637795-59637906
Length
1469 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
GCTTTCCAAATTTTCTGTAGGTA
3' ss Score
8.7
Exon sequences
Seq C1 exon
TGTGATGGTACAGACCTGACTCCAAAGATCCAGGAGCTGAAGTTCCAGTGTATAGTGTTTTTAAACATTCCCAG
Seq A exon
GTAAGCTCAAGACAGATGCTTGGAGAAAATAGAAATGAATATTACTACTACTAATAGTTAAAAAAGAAAAAACAATGATACCTGCAAGTTGTTCTAGGTTGGGTGGATGTGCAGGAAGTGTATTGCTACTGTGCTGCCTTCCTGAGAGCTTCCTGCTTATGATACTGCTAATTAGCAGCACAAAAAAGGATCAGAGCCCAGGGTGCAGCAAAGTTATCCTTTGAAAATGGTATCCAATGATTCAGAGCTAGTAGAGAATATTGTTTTAACAAACATGTTTCCAAGTGTTGTGCACCTAACCTGCAAACCAGACAGTAAACCAGACACAGATGCCTGGTCTTCTGCTTTACTAGAAACAGCGTGAGAGGCAAAAATATCAATATTTTTCAAGAAAAGAACATGAAGTCTGTTGAAAGAAATGTTTTTCTTTTATTTTTTCTCAATATAGTAGAAGATGTTCCAAATAGAAATATATCTGTATTTTTAAAAATTGTCTTCCTTCTGCTCTCTAGACCAGTGGTCTCAAAAATCTTTTGATTGTGCGCTCCTACTGGTAATTAATAAAATTTTTGAGCATGAAAATGTGAATTTATGTATTTGTGTATTAGTGTACTAGTAGATTATACACACTTTAAAACAGTCACAAATAGAAGTTAAAAGAGGATGTGACAAAGATGAAATAAACACTATTTAGAATACAGTTTTATTAATAGTATGGAATATATTTTCTTCCTACACTACAATGGGTTGTCTTCTGCACCCCACTTTGGAGGCTACTGCATTAGACAGCCTACCTTTTTGCTCCATGAGCAATCCCAAACACATGGGAGTCCTGCACTGCCTTTACTGCAAGCTTCTATTTTGTGTCTCCCTTCTTCTGTTACTCTTTAGATAGCTTTTACATCCATCCTTGGGTGGTAGGAAAGGTATACACAATAGCTGCATCTGCTCCTGTTCATTTCTCCCGTCTCCTTGAGCTATGTAACCTTTTACAATCCTTATACCATCAGAGTTTATGAGTCATCAGGGAGAGAGGAAATGGAGATCTGAGGCTGCTGCTGCAGCCCTTTGCCTTCATAGCAGAGGGGATAAGGAACTTTCATGCAGGCAAATTGCAGGTGCCAGTGCAGCTCAACAGCTGATCTGTAGAGTAGACCAAGCGGGGAGAAAAAAGTGCTGCTGCTCTGTTGCCTGTGGTTTGGTGTTCCTCCCATTTCCTTGCTTGTAAAGGAACCTGCCAAAGACTGTGAGGAATAAACTTGTGAGTGATGTACCAGCTTAGAAACTAGGGACCAGTTTCCCCCTTTCTTCAGTCCTTGCCAATGTAACAATTGTCCTTCAACTGAATCCTGAAACATTTGTTTGGGTTTCTACTGGAGGAGATCAGAACAGGCCAATAGTCAGGCTAATAGTCAGGACCCATCAGGGAAAATTACTTTCTCAAAGCTTGCTTTCCAAATTTTCTGTAG
Seq C2 exon
GTATTGTGCTGGCACAATGCCCTGGGGAAACCCTGGAGATCACAGAGACTTTGAACCTCAGCGCCATGATGATGGCTACATTGAAGTCATTGGGTTCACCATGGCCTCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012890:ENSGALT00000021020:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.219
Domain overlap (PFAM):
C1:
PF0060914=DAGK_acc=FE(15.2=100)
A:
NA
C2:
PF0060914=DAGK_acc=FE(23.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]