HsaINT0047330 @ hg19
Intron Retention
Gene
ENSG00000157680 | DGKI
Description
diacylglycerol kinase, iota [Source:HGNC Symbol;Acc:2855]
Coordinates
chr7:137255921-137257584:-
Coord C1 exon
chr7:137257511-137257584
Coord A exon
chr7:137256033-137257510
Coord C2 exon
chr7:137255921-137256032
Length
1478 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
3' ss Seq
TCTTTAATCTTCTCTTGCAGATA
3' ss Score
12.65
Exon sequences
Seq C1 exon
TGTGATGGAACAGATCTCACCCCAAAGATTCAGGAACTGAAGTTCCAGTGTATAGTATTTTTAAATATACCCAG
Seq A exon
GTAGGCTCTGTTTGTATTGTTTCCTTGGTTTGACGTGAACTCTGACTTGAGGTTATCTGTTTTCATAACAGAAAAGTTTCAGATGTAAACAATGAAGATCAGTTATCTAAATGGGTAATTAAAGATTTCTAGGTCTGATAATTCATTCTCCGATTTGGTTTATTTAGTGTTCTTTGTGGTTGGTGGTTTTGTGCGTCATGTGGCATGCATTGTCTGTACTTACCCATCTTTAAGAAACCCAGGCACCCCTCTTGACTGGAACATCTTAATTTATTTCTAAATTACTGTTCTTCCCCTCTTCCTCCCCATCTAAGAATGAGAGAATTGAAACACTTTTTTTGTTCTCAGTTTCCTAAAAACTGTTGAAAAACCATCCAGTCTGATTCAAGTGCGGAATTCATTCAAAATTGTTGCCAGATGATTTCTTTGAAAAATAGGATGAGTTAGAGTATTGTTTTCTAGCCAGGATGTCAACTCTCCATGGTGCTATTACGCACTTCAGGAGAAAGGGATATTTAAGATAACTAGACTCAAAATAAACATATTATCTCAGTGGCATAAATTATGTTCTAGGCCCTGAAGCCAAGATTTTGGAAGGGATGGATCTATAACCATTTATTTGCCTGCCAAACAACTCAGACACAAAATCTGCAAATACATTGTATTTAGACTGAATTTAATTGAAATGAGAGTTGTATGTAAATCTGTGGCTAGGAAAACACATCATAGTCTCCTGATTATTCTTGGCAGTGCTCAATATAGTCAGTTACAATTTTATTCCAGAAATATTTACAGCTTAATTGAAGTAGAAGGCCTTGATTCTCAGAAAGCATTGTTTATTACTTTGCTTTATTATTCTTTCTCTTGTCCTTCCTCTCTTGTCCTTCTTCCTCTCTTGTCCTTCTTCTGTCTTTTCTTGCTTCTCCCTCTTTCCATCTGTATTCTTCTTCCTCTATTTCTCCAATTTCTTCTGTTTCCCATTCTCTTTCTAATCTCTTATCTATATTTCATCTCTTCTTCACTCTGTCTTCCATAGTTACCTTTCCCTTCTCCTGTGAGTACCTCTTATTTTGCTTATGTATTAATGGCAAATGCTTCCCACTTCATTTCCCTGTCTCTTTTCTACTGGCATGCATACATCTTCCTTTAAGACCAAATTCTGAAACCACCTATAGATAATTCATGATATATCATAGAAAACAGACATACATGAATCATAGTGAGAAATATAGATAACGAACGAGGAGAAAGTTGGATACCACAGGATACTTTTGTTGCAAAATTATGGCCCGTTTTCACAGCTTGGTATTTTGTAGATGATAAGAAGTGCATTTCCTTTTCTAATGGAAGGTGTGTACCAAGAATGGAAAACTGTTTTTATGTTTGATAAACATTGGGTCTAACTACAAACTAACACCTCATGATAGTCATGAGAAGGATGGGACATATTTACTTCTGTCTTTAATCTTCTCTTGCAG
Seq C2 exon
ATATTGTGCTGGCACAATGCCCTGGGGAAACCCAGGTGATCACCATGATTTCGAACCTCAGCGTCATGATGATGGTTATATTGAAGTCATTGGATTTACCATGGCCTCTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000157680-DGKI:NM_004717:18
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.217
Domain overlap (PFAM):
C1:
PF0060914=DAGK_acc=FE(15.2=100)
A:
NA
C2:
PF0060914=DAGK_acc=FE(23.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)