BtaINT0048632 @ bosTau6
Intron Retention
Gene
ENSBTAG00000019980 | DGKI
Description
diacylglycerol kinase, iota [Source:HGNC Symbol;Acc:HGNC:2855]
Coordinates
chr4:102057270-102059487:-
Coord C1 exon
chr4:102059414-102059487
Coord A exon
chr4:102057382-102059413
Coord C2 exon
chr4:102057270-102057381
Length
2032 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
ATTTTACTCTTCTCTTGCAGATA
3' ss Score
12.15
Exon sequences
Seq C1 exon
TGTGATGGGACCGATCTTACCCCAAAGATCCAGGAACTGAAGTTCCAGTGTATAGTATTTTTAAATATACCCAG
Seq A exon
GTAAGCCCTGTTCTTATTGTCTTCCTTGGTTTGATGTGAACTCTGTTTGACCTAAGGTCCTCTGCTTTCATGATGGAAAATTTCCAGGTACAAGCGGTGAAAAATAGTTACTTTAATGACTTGTTAAGAGTCTCCAGGCCTGATCATTTTCTCTCCTACTTGCTTTGTTTAATGTTCTCTGTGGTATTTTTTCATGTATGTGGTATAGCATGCATGGTGTATACTTACCCATGCTTAAGAAGCCCAGGCAGCCCTCTGGACTGAGACATTTTAATGTAATTCCCAATTACGGACCCCTCCACCCTGTCACCCTCCCCAGGAATGATGGGCTTGCATAAATACGTGTTCTTAGTTTCCCAAAAGCTATTAGGAAACCTTCCAGCCTGATTTCAGCATGGAATTCATTCAAAATCGTTGCCAGATGATTGCTTTGAAAAATAGGATCAATTAGAGCAGCATTTTCTAGCCAGAAGGTCAGCTTTCTTTGGTGCTATTATATACCTCAGGAGAAAGGGTATTTAAGATTAACTAGTCTCAAAATAAGCACATTTCTCAGTGGGCTTAAATTCAGATTCTAGGCTCCCAAGCCAAGATTTGAAAGGGATGGATCCCTGACTCTTTGTTATTTGCAAACCAGACAACTCAGACACAAAAATCCACAAGTAAGTTCTATTTAGACTGAATTTGGTTGAAATGAGAAGTGTATGTAAATCTATGTCTGGGAAAGCATAGTCTCCTGGTGACTTCTGGCCATGCTCAGTTTAGCCCCTTACAACCTATTCCAGAAGTATTTTCATCTTCGTCGGTGAAGTAGGGGACCTAGATTCTCAGGAAACATTGTTCGTTAGCTTGCTTTAATTTTCTTTTCTTCTCCTTATTCCTCTTCTTGCTCCTTCCCATATCCCCTCTGGACTTTGTTTATTCTACTTTTCAGTGTCCCTGACTTCCCCTTCCCTTTCTGATCTCACATCTTTGTCTCATCCTTTTTTTACTCCTCTGTCTTCAGTTACTGTTCCCCCATCCTGGGGTACTCATTGTCTTAATTATGTATTTACTGCTGATGCTTACCCAGCTCGAGTCTCTCTTCCTCTCTTACTGGCATGTATATGTCTCCCTCCAAGACCAAATTCTGACACCACCTATTGATAACTCATGGGATGTCATAGAAAGTAGGCCTGTGTGAATTATAGGGTAAGAAACACACACACACACACACACACACACACACACACTATTGATACTATGTATAAAATAGATAACTAATGAGAATCTACCGTACACCACAGGGGACTCTACTTAAAGCTCTGTGGTAACCTAAATGGGAAGAAAGTCTGAAAAAGAGGGGATTGCTGTTGTTGTTCATCACTCAGTTGTGTCTGACTCTTTGTGACCCCATGGACTGCAGCACACAGGCTTCGCTGTCCTTCACCATCTGCCAGAGCTTGCTCAAACTCATGTCCATTGACTCAGTGATGCCATCCAACCATCTCGTCCTCTGTGGTCCCCTTCTCCTCCTGCCTTCAATCTTTCCCAGCATCAGGGTCTTTTCTAATGAGTCGACTCTTCCCATCAGGTGGCCCAAGTATTGGAGCTTCAGCATCAGTCCTTTTAATGAGTATTCAGGATCGATTTTCCTTAGGATTGACTGGTTTGATCTCTTTGAACTCCAAAGGGAAAAAAGAGGGGATGGATATATACTATAGCTGATTCTCTTTGCTGTGCAGTAGAAACTAACACTACATTGTAAAACAACTATACTCCAATAAAAATTTAAAAATAAAAAGTTGACAATTAGTAGAAAATTGGACACCATGGGGTGCTTTTGTTGTCAAATTTTGACCCATTTTCATAAATTGATACTTGGAGGGGAAGGGGATAAACCCATTTTCTTTTCTGTTGGGAGACATGAACCAAGAGTAGAAAGCCATTCTTTTGTGAAATCAACATCAGATCAAACTATAAATTATTACCTGATGATGATCACGAGAAGACTGGCACAAACTCTAATTCTAATTTTACTCTTCTCTTGCAG
Seq C2 exon
ATATTGTGCTGGCACAATGCCCTGGGGGAACCCAGGAGATCACCATGACTTTGAACCTCAGCGTCATGATGATGGTTATATTGAAGTCATTGGGTTCACCATGGCATCTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019980:ENSBTAT00000026616:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.224
Domain overlap (PFAM):
C1:
PF0060914=DAGK_acc=FE(15.2=100)
A:
NA
C2:
PF0060914=DAGK_acc=FE(23.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]