RnoINT0047019 @ rn6
Intron Retention
Gene
ENSRNOG00000026705 | Dgki
Description
diacylglycerol kinase, iota [Source:RGD Symbol;Acc:735049]
Coordinates
chr4:64546760-64548485:-
Coord C1 exon
chr4:64548412-64548485
Coord A exon
chr4:64546872-64548411
Coord C2 exon
chr4:64546760-64546871
Length
1540 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
GCTTTTGACCCTGTTTGCAGATA
3' ss Score
8.93
Exon sequences
Seq C1 exon
TGTGATGGGACAGACCTCACTCCAAAGATCCAGGACCTGAAGTTCCAGTGTATAGTATTTTTAAATATTCCCAG
Seq A exon
GTAAGCTCTGTCCATGCTGTTGCCTTTGTGCGGTGTGAACTCTGACAACTGAACGCAGAAGTGAAGCGTCTCGGGTATAACCCGTGAAATCCCGTATTTTAGTAGTGTTAAAGGTTGCCCATTTTCTTCTCCTGCCCAGCTTGTTTCCTGTAGCAGGTTGCTTTGTCTGTGATAAAGAATTCATTATCTGTATTCTCCTGTCCTTGAGAGACGCAGGCTGTTTTCTCAGACATCTTCATTTAATTCTTATTACTGCTCCACACCCACATTACAGCCTCAAGGGAAGGAGATGTGATGGAGTCCTTTCAGTCTCATCCAGCCTGTTGAGGATGGGTGTCTCTGCCAGGAGCTAGAATTCATGGGAGAGGCATGGTGTAGACACAGAGCCTGGTGTAGACACAGAGCATGGTGTAGACAGGGTTTCAATGCTCTGTGGAATTATGCACAAGGAGAAAGGAATACTTAGGACTACTTTTTAAAATAAATATATCACTTTAGTGGCATAACGTTGGATTGCAGCTTCCCAAACCAAGGCACTGGAAGGCACGGGCCTATATCCCCTCATTACTTGCTATCAACCAACTCAGACAAATGAGCTGAGCTTGGGTGAATTTATAGGAAATGAGCATCTATGGAAACTGATGTTTGGGGAAGCCTCTCAAGGCCTCCAGGTTGCTCTTGGAAGTGCTCAGTCCCCTGAGGTCCAAGCGTGTCTCAGGGGCATGAGTCAACGTGATTTTAGTCTACGGCTTACAGATTTGCAGAGCACTGGATGGCAGTGCCTACTCCTCTCTTCCCGTATGTGTCTGCTTCTCCAATTTTATAATTTTATTTATTCCTTTCCCTTTCTTATCTCGCGCCTCTCACATCTCCTTCCACCCATTTTTCTTCCCTCCCTCTAGTCCATCCTTTCTATTGAGAGAATATATAGTTCACAGTTCTACCTTAGCCTCTCGTGTACCGGGAGAGCAGGCATACACCACCATGCCTAGCATTTTTTTTTGTCTTTTATTTATTTGAAGCAATTTTCATTCATTTCCTTCCCCCTGTGAGAATTTCTTGTCTTACTTTCTGTCGTGATAAATGATGCCATCTTAGTTCATGTCCCTCCTACACTGCATGGATTTCTTTTTATTTAAGAGAATTGTGAAATTATTAAAGATAATTCATAATAACATTGTAGACAACAGGAACCCTGAAGTGAGGAATGATGGGATAGATGGGCGCCACGGTATACTTTTCTTGTTAAATTGTGGCTTATTTTTGCAAGATTGTGATATTCTGGAGACAGCTTTTTCATACTTGAAGGTGGACATCTATAGCAATAACTGCTCTTATCCTTGAAAAGCGTCAAGTCCCACTGGAAGTTATTTTCAAGAGTCTCCTTATAAAGTGACGCACAGAAGCACAACCTTCCCCCACCCCCTATGTATTCCTGAGCATACCATGCAAGACCTTAGTGTATTAACCCCAAATTACTTCCCAGGGCTAATCAGGAGTAGAATGAAGTAGCTTTAACTGCTTTTGACCCTGTTTGCAG
Seq C2 exon
ATATTGTGCTGGCACAATGCCTTGGGGAAACCCTGGAGATCATCATGACTTTGAACCCCAGCGTCATGATGATGGTTACATTGAAGTCATCGGATTCACTATGGCCTCTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026705:ENSRNOT00000033268:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.213
Domain overlap (PFAM):
C1:
PF0060914=DAGK_acc=FE(15.2=100)
A:
NA
C2:
PF0060914=DAGK_acc=FE(23.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]