GgaINT0109712 @ galGal3
Intron Retention
Gene
ENSGALG00000013117 | PIK3C2G
Description
NA
Coordinates
chr1:66151507-66154516:+
Coord C1 exon
chr1:66151507-66151664
Coord A exon
chr1:66151665-66154404
Coord C2 exon
chr1:66154405-66154516
Length
2740 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAAT
5' ss Score
6.41
3' ss Seq
CTTGCTATCTTTATTTACAGCTG
3' ss Score
9.92
Exon sequences
Seq C1 exon
GATAAGAAACACCTACCCTGCTTGTGATTTGAAGACAAACACTGGGAAGATCTGGAGTGTTGCAACAAAGTTCCCAGACCACATTCTGGGTAAAATAAGACTCAGAATCAGCATCTGGACAGATTCTTCACCATCTCCTCTGCTTCTTACACAACATG
Seq A exon
GTAAATGATTGAAGTGTGTATATGTTTCAGTTCCATTGAGATGATAACCAAATAAATTTGTTATCTGGAAAGATACTTAGAGAGTAAGCCTTACATCAGTCCTGAGTATATTCATTTAATGAATTTGCCATAAAAGTAAAATCTCATAGTGTGTGAAACTTTGCTAATATGTAGATTCCTACTTTCTTTAATCATAATCAGGACCAATTCTGGCAGTATAAAATGGGGCCAACATTCAAGCTTTGATTCATAAGGAATTTACGCTTGTGGCTAATTTAAAATGTAAAGGTAGTCCCCATTAAGTCATGGAACTTTTCACATCGTTAGCTCTACTGCTAAATTGAAGACTTAAGAGTCTTTGATTGTTAAGACACCTCTGCACCCAAGTACATGTTCATAAAATGACACTGGAGAAATTCCAGCTGGATGTAAGAAAAAGGAGCATAATTGCAAATTGGAACAGTTTGCCCATGGAGGTCATGGAGTTTGCATCCTTGCAGTTTTTTAAGATCTAACAGGACAAAACGCAGAGCAAGATGTTCTGAATTCAGTATTCACTCTCCTTTAGGCAGGACTAGACTGCCTGAAGATTCCTCTCAACATGAGCACTAGTGTTTACAGGAAGCTGCCACTGCCACAGTGCATCCTATACCTATGATGAACGGGAGAAGCTTCGATTCCATCTCTAGTAATTCTTACGTCTTAATCCACATATGGATAAAAGAAAGAAATGAAGAATAAATCCCTTCCATGCTGCTTCATTAAGTGATAGTGTTTTTTGTATGTAAAGGTTATTTGACCATAAAAGGCTGAATTTGACAGGTTGAAAGCTGAAAATCCAAAGCTCTATAGAATGTCGGTCCACATGTATTAAAACACATATTTTTTTTAATAAATGCCTTAGCAAAGACTTCCACTTTTATTTATACAAACTTGGTTACTTGTATTTGAGGCATCTCCACAGTTAATGGAAAGTCTGGCAAAGTAGTATTTTTGAATCATCTTCAATCAAAATTTTGTGAATATTATGATATGTAAGGCTAAAGGTCTTGGGCCATTCGGAACAGAATGGTTGGAGTACAGTGCCCCATCTAATATAAAAAGCAGAAAGAATTGTTCAGCCCTAAAAGAACTGGCAAAGAAAGGCAGGAAAAATTGATCATGGAGTACAAATGAATGATGGTTGCAAGTTTTAGTTTTGTTTTTTCTTTGTTGTTTTTTTTTTTTCCCAGAGTGATTTGAGCAATATGCATCTTATGATCTTAATTTAAGATTCTGTACCTTTCTCCTTACTCTGGTGTGGGTAAATTCAACAAAAAAGAGCTTTGCAGTTTACATGTCAAAGCACCCATGAGGAACTGATGAAAATAGCAAGTTTTCAAAGAGCTGATTACTTAATACCAGTAAAACTGATAGAAATTGTGCAATCCAAGTGTAATCTAGGCAAAAAGAAAACTGGTCCTGTGAATAAAATGAAAACTTCCAAAGGGGAACTTTTGAATCTGTGACACTTTTGTTTAAAATTTACCTATGGTAATTAACTCTTTTATTTCAGTTTCTTTTCTTTTTTTTTTTTAATTTTTTTCTACTTGCAACTACCTTCTCTAAAGATGTTTGCAGTTCTCTGAGGATTTTTCAGTATCACGTTCCCTTAAACTTCCCTGCAGAACAATTCTGCATTTCTTGGTTTGCTTTAAAATAATACTGTCAAAACTCTGGGCCAGGTTTGCCAGTGTGACTAGGCTGCTTTGTTGATTCAGAAAACCATTAAACTCAATAGAAAGTGATTGATTAGACAGTTTGCAACAGATGACTGAATCTGGAGCAGTGTAAATTAGTCAATGTGCAAATGTGAATTACACATTTAATTTTTGTGGAACTTATTTAACTGTGAGTACTTTCTATTTCTTACATATTCACTTGAAGCTTATATTAAAAGCTCCTGCTGCCACTTATTTTGAAGAGATAAGGAAATACCACAAATGAAAAAGAAAGGAAAATCTGCTTTGGCTTTTCTAAGTTTCATCTGCAGACAGTGAGATTTCCTTGGAATTGTGGAAATAGTTCAGACTTTATCTTGCATTGTGAAACCACCTCGATACAAAAACTTTTCACTGAAAAGTCAAAAGTGGTTTCTGCTGAAGAGAGGTATCTCCAGTTTGAAGCATCAGTGCTGGTGGAGTATGCACTGCATGCCTATAAAGAGCAAACCTATAAGGCATACTTGAAATTTGACTACCAGACTGTTTGCAGTTTTTGATCAGTTCTTCTTGTAGCTTCTACATTACTCTACTTCTTGATTATGACTAATAAAATGCAGATACAATGACAAGAAAAACTCTGGAGCCTCCTTGCAACAAAATCTCAGATTTTGCATCAGGCCATGTTCATACACAGGAAATGTACTGAGATACTCATTAGGAAAATGGCTCAGTATTTACAGATTTAAAAGATTAACTATTCACCACTTCCTTTTTTTGGGGGGGGGGAAATCACTTGGCACTTCATTCCAGCTACCCAGAAATCAGGCAGTTTCCTATAAATTGACATAGATTCTCTTAAATGTGAAGTATTTAAAGCAAAATAAATAAAATCAGATGTGGCTTGTTCTGATTCCTCTTGATGAAACTAGTCTCCAGGAGTAGTAACCAATTAGAAAGAAATTCTCATTTACTTAAGAATGCAGTCTGAAATTCTCTAGCAAGCTACTATAAATTTTTCTTGCTATCTTTATTTACAG
Seq C2 exon
CTGGATGTATCACTCACGACTTAATTGTGGAGATCCTCCGTTGCACAAATCAATACCCGGTCCATGAAGAATGTCTTCTAAGTGTTTGTGGCTCTGATGAATTCTTACAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013117:ENSGALT00000021411:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0079413=PI3K_rbd=PU(34.0=61.1)
A:
NA
C2:
PF0079413=PI3K_rbd=FE(38.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]