HsaINT0125002 @ hg19
Intron Retention
Gene
ENSG00000139144 | PIK3C2G
Description
phosphoinositide-3-kinase, class 2, gamma polypeptide [Source:HGNC Symbol;Acc:8973]
Coordinates
chr12:18443789-18446949:+
Coord C1 exon
chr12:18443789-18443946
Coord A exon
chr12:18443947-18446834
Coord C2 exon
chr12:18446835-18446949
Length
2888 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGC
5' ss Score
8.15
3' ss Seq
TTATTCCTCTTTTTCTTTAGCTA
3' ss Score
9.08
Exon sequences
Seq C1 exon
AATCAGAGAAAGATATCATGCAGCTGATGTTAATTTCAATTCTGGGAAGATCTGGAGCACTACTACAGCATTTCCGTATCAGCTCTTTTCTAAGACCAAGTTTAATATACATATTTTTATTGATAACTCAACACAACCTCTTCATTTTATGCCATGTG
Seq A exon
GTAAGCAACCTTGCAAATAAGTCTACAAATCTATACAAAGCTGGTATTGGCGACGTAGCCTTGAATTCAAAGTCTGAAGTTATTAAAAAATAATATTAGCTACTGTTTTTCTCTGAAGTGAAATAAGAAGAAAACATCAGGGATCCATTTGTTAATACTTAAGGGAGGAAAGCAAAACTATTTTCTTCAAGAAGTATCTTCACATAGCTCACCCGATAATATTTTATCTTCCTGCTATAAAATGCTTAATAGCAAGTATAGCAAGTTTTTAATATATTAAAAAATGAATTTCAAAAGATTCTAGATAAGGATGGTATTAAAGTAAAAATGGCTGCTTCTATCTATTAGGAACAAGTATTTCCTTGAAATATAAATAAATTGTGAGGTAGAATAGGCATTGTTACACAGAATCTCTATTTCCTTAATGAGGAATCTAGTAGCATGGTATAACATACCTCCATCAGAATTAGCAAACCTACTGATTCAGTCTCTGGGGATGACACCCAGGAATTTATATTTTATCAAATTCGCCTGAGGATTTTTACTTTTCTAAAGTTTTAGAATATCTGTAAAGTTATTTAGTATCTTACTTCATTGTTATAGTCCACTATTTTGCAAAACAGTATTAGCTCTTTAAACATTTAGATTGCTATTAAGTGAGTTTCTACATATCAACAGGAAACTATTTCCTGGCACATAATGATCCATTAAATATTTTCTTTTATTTATTAATTATTGTTATTATTGTGCTTCTTTCTTACTCTATTCAAGGTTCTCAGCTAATGCAGATGACTCCAATCATAGCAGTGTTATATTGGTATATTAGTTAAGACCCTCTTGGTTGGAAATGAAAAGAAACCAATTCCTGCTAGCTTAAGCAAAAAAAAAAAAAAAATTGTTTTAAAGAATATAGGGGCTGGGCACAGTGGTTCATGCCTGTAATCCCAGCACTTTGGAAGGGCGAGGCAGGCAGATCACCTGAGGTGGGGAGTTCGAGATCAGCCTGACCAACATGGAGAAACCCCATCTCTACTAAAAATACAAAAAATTAGCCAGGTGTGATGGCGCATGCCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATTGCTTGAACCAGGGAGGTGGAGGTTGCAGTGAGCCGAGATCGCACCATTGCACTCCAGCCTGGGCAACAAGAGCAAAACTCCATCTCAAAAAAAAAAAAAAAAAATATATATATATATATATATATATATATGGATTTATTATAGAATTCAAGTATATGAATTTCAGCAAACAATTAGGAATATATGAAAAACACAAATAATCAAGCAGCCCAGAATTCCTGTATGCATCTCATTTCATTTCATATAATTGCTTCTCATATTCCTCTCACTCTCTGATCACTCATTTCCTTTGCTTATCTAAAACAAGTGGGAAGCCAAGCTACTAGTCTAGCTATCTACAGACAGTTCACTATCTCTATGGGATCCAGCTCCCAGTTCCTAAAAGCCAGATTCTGATTATTCGGCCAAGATCAATGATGCTGCACCTTGATCCAATCAGAAAGACCATAGGTTGGGTCATGTTGTCTTCAGTTGCTGGCCACTATTAAATAGCATGTTCATGTAAGAGCTTAAAAGGGAGGATTATGATATGTGAATATGAGAAGACAAATGACTTTACCCTATAGCATGTCTACATTTTGAGTTCCAAAGGAAAAGGTGGAGAGAGAGAGTAGATATTCATTAAAGTTTCTATAATATAGCTGTTCAAGCTAGAACCTTGAGTAATTACTACATGGGAAAGGAAGAAGAACCAACGGTGGATTTGGAGTCTGACAGATCTTGTTTAGAGTCTAGAGAACAACCAACTGTGGAGACTTACAGTCATTAAGGGCACAGGCCTTGGAGTAAACAGATATTGTTTAAGTGTGACACTTAACACTAACTGTGTAATCTCTACAAAATTGCATAGCTTCCCTGAAAATGAGTCCATTCATCTTTGAAACTTGGGATATAATACCTATATAATAGGTACAATAATCAAGAAATGACATGTAAAGCACTTAATAGAGTAATTGCTCCGTAAAATATAGCTATTATTAATATTAATACTAACATTATATCCCAGAGTGAATATAACCTGTATAACACTTTTAAATTTACTGGCCACGTTTGTCTATTTTTTTATGATAGCTTCGCACCAGATTCTTGAAGAAAATAAACTGTGCTATTATAAATCCTATTTAACAGATGAAGAAACTAGGTCAAAAAGGCGAAATAACTTGTTTACATAAATCAACTAAAAAATGAAAAATCTATATTATTTCCATGTCTCAGTGACAGAACATTGATAAGAACATCTTAATGATCACAGAATTGTCTTAATGTCATGGCATGAATATGAATATTAACTAGTGTAAATGCCCTGAAAATATTTATTGCAGTTAATTCAGAATCTTTTATCTTGCTGATACCCTTAGAAGGAGCAATATGTCTCACTTTGGTTGAAAATGGAAAGAATCAAACACCCCCTGGAACTTTTGCCTGGCTATACCCAAGTTCCTGAGTGTATTTCCCAAGTCCCTAAGAGAAACTGCAGTAGATTTTTATGCAGAACTGCAGTGTACCAAGGGCTTTAACATGAGAAACACAATACCTAGCTTTGTTATATCACATGAAAGCAGAACTGATCAAAGGAATTGCAAACAACATTTTCCCCAAATATCTTTAAATCTAACCAGTCTGATAAGTCAGATGAATCTCAATTTAATTCCCCTTGATGAAGCTAGACAGTTACAATCCTTCATAATGTGTTGGTCATATTTTGTGCTCAAAAACTTTTCCTAGTCAGTATATGATACACTTTTATTGACTTTTATTATTCCTCTTTTTCTTTAG
Seq C2 exon
CTAATTATCTTGTCAAAGATCTAATTGCAGAAATTCTGCATTTTTGCACAAATGACCAGCTACTCCCCAAAGATCATATTCTAAGTGTATGTGGCTCTGAAGAATTTTTACAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000139144-PIK3C2G:NM_004570:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0079413=PI3K_rbd=PU(33.7=61.1),PF0027315=Serum_albumin=PU(14.4=37.0)
A:
NA
C2:
PF0079413=PI3K_rbd=FE(38.8=100),PF0027315=Serum_albumin=FE(27.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)