HsaINT0125002 @ hg38
Intron Retention
Gene
ENSG00000139144 | PIK3C2G
Description
phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma [Source:HGNC Symbol;Acc:HGNC:8973]
Coordinates
chr12:18290855-18294015:+
Coord C1 exon
chr12:18290855-18291012
Coord A exon
chr12:18291013-18293900
Coord C2 exon
chr12:18293901-18294015
Length
2888 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGC
5' ss Score
8.15
3' ss Seq
TTATTCCTCTTTTTCTTTAGCTA
3' ss Score
9.08
Exon sequences
Seq C1 exon
AATCAGAGAAAGATATCATGCAGCTGATGTTAATTTCAATTCTGGGAAGATCTGGAGCACTACTACAGCATTTCCGTATCAGCTCTTTTCTAAGACCAAGTTTAATATACATATTTTTATTGATAACTCAACACAACCTCTTCATTTTATGCCATGTG
Seq A exon
GTAAGCAACCTTGCAAATAAGTCTACAAATCTATACAAAGCTGGTATTGGCGACGTAGCCTTGAATTCAAAGTCTGAAGTTATTAAAAAATAATATTAGCTACTGTTTTTCTCTGAAGTGAAATAAGAAGAAAACATCAGGGATCCATTTGTTAATACTTAAGGGAGGAAAGCAAAACTATTTTCTTCAAGAAGTATCTTCACATAGCTCACCCGATAATATTTTATCTTCCTGCTATAAAATGCTTAATAGCAAGTATAGCAAGTTTTTAATATATTAAAAAATGAATTTCAAAAGATTCTAGATAAGGATGGTATTAAAGTAAAAATGGCTGCTTCTATCTATTAGGAACAAGTATTTCCTTGAAATATAAATAAATTGTGAGGTAGAATAGGCATTGTTACACAGAATCTCTATTTCCTTAATGAGGAATCTAGTAGCATGGTATAACATACCTCCATCAGAATTAGCAAACCTACTGATTCAGTCTCTGGGGATGACACCCAGGAATTTATATTTTATCAAATTCGCCTGAGGATTTTTACTTTTCTAAAGTTTTAGAATATCTGTAAAGTTATTTAGTATCTTACTTCATTGTTATAGTCCACTATTTTGCAAAACAGTATTAGCTCTTTAAACATTTAGATTGCTATTAAGTGAGTTTCTACATATCAACAGGAAACTATTTCCTGGCACATAATGATCCATTAAATATTTTCTTTTATTTATTAATTATTGTTATTATTGTGCTTCTTTCTTACTCTATTCAAGGTTCTCAGCTAATGCAGATGACTCCAATCATAGCAGTGTTATATTGGTATATTAGTTAAGACCCTCTTGGTTGGAAATGAAAAGAAACCAATTCCTGCTAGCTTAAGCAAAAAAAAAAAAAAAATTGTTTTAAAGAATATAGGGGCTGGGCACAGTGGTTCATGCCTGTAATCCCAGCACTTTGGAAGGGCGAGGCAGGCAGATCACCTGAGGTGGGGAGTTCGAGATCAGCCTGACCAACATGGAGAAACCCCATCTCTACTAAAAATACAAAAAATTAGCCAGGTGTGATGGCGCATGCCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATTGCTTGAACCAGGGAGGTGGAGGTTGCAGTGAGCCGAGATCGCACCATTGCACTCCAGCCTGGGCAACAAGAGCAAAACTCCATCTCAAAAAAAAAAAAAAAAAATATATATATATATATATATATATATATGGATTTATTATAGAATTCAAGTATATGAATTTCAGCAAACAATTAGGAATATATGAAAAACACAAATAATCAAGCAGCCCAGAATTCCTGTATGCATCTCATTTCATTTCATATAATTGCTTCTCATATTCCTCTCACTCTCTGATCACTCATTTCCTTTGCTTATCTAAAACAAGTGGGAAGCCAAGCTACTAGTCTAGCTATCTACAGACAGTTCACTATCTCTATGGGATCCAGCTCCCAGTTCCTAAAAGCCAGATTCTGATTATTCGGCCAAGATCAATGATGCTGCACCTTGATCCAATCAGAAAGACCATAGGTTGGGTCATGTTGTCTTCAGTTGCTGGCCACTATTAAATAGCATGTTCATGTAAGAGCTTAAAAGGGAGGATTATGATATGTGAATATGAGAAGACAAATGACTTTACCCTATAGCATGTCTACATTTTGAGTTCCAAAGGAAAAGGTGGAGAGAGAGAGTAGATATTCATTAAAGTTTCTATAATATAGCTGTTCAAGCTAGAACCTTGAGTAATTACTACATGGGAAAGGAAGAAGAACCAACGGTGGATTTGGAGTCTGACAGATCTTGTTTAGAGTCTAGAGAACAACCAACTGTGGAGACTTACAGTCATTAAGGGCACAGGCCTTGGAGTAAACAGATATTGTTTAAGTGTGACACTTAACACTAACTGTGTAATCTCTACAAAATTGCATAGCTTCCCTGAAAATGAGTCCATTCATCTTTGAAACTTGGGATATAATACCTATATAATAGGTACAATAATCAAGAAATGACATGTAAAGCACTTAATAGAGTAATTGCTCCGTAAAATATAGCTATTATTAATATTAATACTAACATTATATCCCAGAGTGAATATAACCTGTATAACACTTTTAAATTTACTGGCCACGTTTGTCTATTTTTTTATGATAGCTTCGCACCAGATTCTTGAAGAAAATAAACTGTGCTATTATAAATCCTATTTAACAGATGAAGAAACTAGGTCAAAAAGGCGAAATAACTTGTTTACATAAATCAACTAAAAAATGAAAAATCTATATTATTTCCATGTCTCAGTGACAGAACATTGATAAGAACATCTTAATGATCACAGAATTGTCTTAATGTCATGGCATGAATATGAATATTAACTAGTGTAAATGCCCTGAAAATATTTATTGCAGTTAATTCAGAATCTTTTATCTTGCTGATACCCTTAGAAGGAGCAATATGTCTCACTTTGGTTGAAAATGGAAAGAATCAAACACCCCCTGGAACTTTTGCCTGGCTATACCCAAGTTCCTGAGTGTATTTCCCAAGTCCCTAAGAGAAACTGCAGTAGATTTTTATGCAGAACTGCAGTGTACCAAGGGCTTTAACATGAGAAACACAATACCTAGCTTTGTTATATCACATGAAAGCAGAACTGATCAAAGGAATTGCAAACAACATTTTCCCCAAATATCTTTAAATCTAACCAGTCTGATAAGTCAGATGAATCTCAATTTAATTCCCCTTGATGAAGCTAGACAGTTACAATCCTTCATAATGTGTTGGTCATATTTTGTGCTCAAAAACTTTTCCTAGTCAGTATATGATACACTTTTATTGACTTTTATTATTCCTCTTTTTCTTTAG
Seq C2 exon
CTAATTATCTTGTCAAAGATCTAATTGCAGAAATTCTGCATTTTTGCACAAATGACCAGCTACTCCCCAAAGATCATATTCTAAGTGTATGTGGCTCTGAAGAATTTTTACAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000139144:ENST00000433979:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0079413=PI3K_rbd=PU(33.7=61.1)
A:
NA
C2:
PF0079413=PI3K_rbd=FE(38.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development